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Number of items at this level: 156.

2024

Gilbert, R. A., Davis, C., Gravel, J. L. and Ouwerkerk, D. (2024) Genome sequence and annotation of Pyramidobacter sp. strain YE332, isolated from a cattle rumen fermentation of Leucaena leaf. Microbiology Resource Announcements, 13 (4), e0101223.

Kayal, A., Nahar, N., Barker, L., Tran, T., Williams, M., Blackall, P. J., Turni, C. and Omaleki, L. (2024) Molecular identification and characterisation of Mannheimia haemolytica. Veterinary Microbiology, 288 . p. 109930. ISSN 0378-1135

Roy Chowdhury, P., Alhamami, T., Venter, H., Veltman, T., Carr, M., Mollinger, J. L., Trott, D. J. and Djordjevic, S. P. (2024) Identification and evolution of ICE-PmuST394: a novel integrative conjugative element in Pasteurella multocida ST394. Journal of Antimicrobial Chemotherapy . ISSN 0305-7453

2023

Ambrose, R., Blakebrough-Hall, C., Gravel, J. L., Gonzalez, L. A. and Mahony, T. J. (2023) Characterisation of the Upper Respiratory Tract Virome of Feedlot Cattle and its Association with Bovine Respiratory Disease. Preprints, 15 (2). p. 455.

Bajagai, Y. S., Yeoh, Y. K., Li, X., Zhang, D., Dennis, P. G., Ouwerkerk, D., Dart, P. J., Klieve, A. V. and Bryden, W. L. (2023) Enhanced meat chicken productivity in response to the probiotic Bacillus amyloliquefaciens H57 is associated with the enrichment of microbial amino acid and vitamin biosynthesis pathways. Journal of Applied Microbiology, 134 (5). ISSN 1364-5072

Hasoon, M. F., Jarocki, V. M., Mohammed, M. H., Djordjevic, S. P., Yip, H. Y. E., Carr, M., Khabiri, A., Azari, A. A., Amanollahi, R., Jozani, R. J., Carracher, B., Mollinger, J. L., Deutscher, A. T., Hemmatzadeh, F. and Trott, D. J. (2023) Antimicrobial susceptibility and molecular characteristics of Mycoplasma bovis isolated from cases of bovine respiratory disease in Australian feedlot cattle. Veterinary Microbiology, 283 . p. 109779. ISSN 0378-1135

Langhorne, C., Gupta, S. D., Horsman, S., Wood, C., Wood, B. J., Barker, L., Deutscher, A., Price, R., McGowan, M. R., Humphris, M., Ranjbar, S., Henning, J. and Gibson, J. S. (2023) Bacterial culture and antimicrobial susceptibility results from bovine milk samples submitted to four veterinary diagnostic laboratories in Australia from 2015 to 2019. Frontiers in Veterinary Science, 10 . ISSN 2297-1769

Loh, Z. H., Hungerford, N. L., Ouwerkerk, D., Klieve, A. V. and Fletcher, M. T. (2023) Identification of Acid Hydrolysis Metabolites of the Pimelea Toxin Simplexin for Targeted UPLC-MS/MS Analysis. Toxins, 15 (9). p. 551. ISSN 2072-6651

Naseem, M. N., Omaleki, L., Templeton, J. M., Muralidhar, M., Botella, J. R., Blackall, P. J. and Turni, C. (2023) Use of piggery effluent for point-of-management diagnostics: A proof of concept. Animal - science proceedings, 14 (7). pp. 820-821. ISSN 2772-283X

2022

Alhamami, T., Roy Chowdhury, P., Gomes, N., Carr, M., Veltman, T., Khazandi, M., Mollinger, J. L., Deutscher, A. T., Turni, C., Mahdi, L., Venter, H., Abraham, S., Djordjevic, S. P. and Trott, D. J. (2022) Correction: Alhamami et al. First Emergence of Resistance to Macrolides and Tetracycline Identified in Mannheimia haemolytica and Pasteurella multocida Isolates from Beef Feedlots in Australia. Microorganisms 2021, 9, 1322. Microorganisms, 10 (4). ISSN 2076-2607

Ambrose, R., Blakebrough-Hall, C., Gravel, J. L., Gonzalez, L. A. and Mahony, T. J. (2022) Characterisation of the Upper Respiratory Tract Virome of Feedlot Cattle and its Association with Bovine Respiratory Disease. Preprints . p. 2022120438.

Awawdeh, L., Turni, C., Mollinger, J. L., Henning, J., Cobbold, R. N., Trott, D. J. and Gibson, J. S. (2022) Antimicrobial susceptibility, plasmid replicon typing, phylogenetic grouping, and virulence potential of avian pathogenic and faecal Escherichia coli isolated from meat chickens in Australia. Avian Pathology . pp. 1-32. ISSN 0307-9457

Bauer, M., Ison, K. A.D. and Barber, D. G. (2022) Strategies for profitable beef production with Holstein steers. In: Australian Association of Animal Sciences 34th Biennial Conference 2022, 5–7 July 2022, Cairns, Queensland.

Chinivasagam, H. N., Estella, W., Rodrigues, H., Mayer, D. G., Tran, T., Onysk, A., Weyand, C., Diallo, I. and Billington, C. (2022) Re-used or New Bedding Are Not Drivers of Salmonella Levels and Serovar Emergence in Commercially Farmed Broilers in Australia. Frontiers in Sustainable Food Systems, 6 . ISSN 2571-581X

Keerqin, C., McGlashan, K., Van, T. T. H., Chinivasagam, H.N., Moore, R. J., Choct, M. and Wu, S.-B. (2022) A lytic bacteriophage isolate reduced Clostridium perfringens induced lesions in necrotic enteritis challenged broilers. Frontiers in Veterinary Science, 9 . ISSN 2297-1769

Lemin, C., English, B. H. and Rolfe, J. W. (2022) Liveweight performance of cattle grazing Redlands and Wondergraze leucaena north Queensland. In: Australian Association of Animal Sciences 34th Biennial Conference 2022, 5–7 July 2022, Cairns, Queensland.

Naseem, M. N., Turni, C., Gilbert, R. A., Raza, A., Allavena, R., McGowan, M., Constantinoiu, C., Ong, C. T., Tabor, A. E. and James, P. (2022) The role of Staphylococcus agnetis and Staphylococcus hyicus in the pathogenesis of buffalo fly skin lesions in cattle. Veterinary Microbiology, 10 (4). ISSN 0378-1135

Ouwerkerk, D., Gauthier, E., Yuan, Y., Costa, D. F. A., Laycock, B. and Fletcher, M. T. (2022) In vivo rumen microbial degradation of polyhydroxyalkanoate biopolymers. In: Australian Association of Animal Sciences 34th Biennial Conference 2022, 5–7 July 2022, Cairns, Queensland.

Roy Chowdhury, P., Alhamami, T., Venter, H., Veltman, T., Carr, M., Mollinger, J. L., Trott, D. J., Djordjevic, S. P. and Putonti, C. (2022) Complete Genome Sequence of Pasteurella multocida Sequence Type 394, Isolated from a Case of Bovine Respiratory Disease in Australia. Microbiology Resource Announcements, 11 (3). ISSN 2576-098X

Sullivan, M. T., Hopkins, K., Buck, S. R., Mayne, B. and Christensen, B. (2022) Steer liveweight gain on Redlands Leucaena leucocephala (leucaena)-Urochloa decumbens (signal grass) pastures in coastal central Queensland. In: Australian Association of Animal Sciences 34th Biennial Conference 2022, 5–7 July 2022, Cairns, Queensland.

Templeton, J. M., Botella, J.R. and Blackall, P. J. (2022) Are point of management assays relevant for food safety in the poultry industries? Microbiology Australia, 43 (2). pp. 67-70. ISSN 2201-9189

2021

Edwards, J. E., Dagar, S. S., Kittelmann, S. and Gilbert, R. A., eds. (2021) Advances in the Understanding of the Commensal Eukaryota and Viruses of the Herbivore Gut. Frontiers in Microbiology . Frontiers Journal Series, 140 pages. ISBN 978-2-88966-674-4

Alhamami, T., Chowdhury, P. R., Gomes, N., Carr, M., Veltman, T., Khazandi, M., Mollinger, J. L., Deutscher, A. T., Turni, C., Mahdi, L., Venter, H., Abraham, S., Djordjevic, S. P. and Trott, D. J. (2021) First Emergence of Resistance to Macrolides and Tetracycline Identified in Mannheimia haemolytica and Pasteurella multocida Isolates from Beef Feedlots in Australia. Microorganisms, 9 (6). p. 1322. ISSN 2076-2607

Chinivasagam, H.N., Pepper, P.M. and Blackall, P.J. (2021) Impact of antibiotics on fluorescent Pseudomonas group and Bacillus cereus group isolated from soils exposed to effluent or waste from conventional and organic pig farming. Journal of Applied Microbiology, 130 . pp. 1130-1141. ISSN 1364-5072

Gilbert, R. A., Dagar, S. S., Kittelmann, S. and Edwards, J. E. (2021) Editorial: Advances in the Understanding of the Commensal Eukaryota and Viruses of the Herbivore Gut. Frontiers in Microbiology, 12 (392), 619287. ISSN 1664-302X

Gilbert, R. A., Netzel, G., Chandra, K., Ouwerkerk, D. and Fletcher, M. T. (2021) Degradation of the Indospicine Toxin from Indigofera spicata by a Mixed Population of Rumen Bacteria. Toxins, 13 (6). ISSN 2072-6651

Ouwerkerk, D., Gilbert, R. A., Gravel, J. L., Maguire, A. J., Minchin, C. M., Hungerford, N. L., Loh, Z. H. and Fletcher, M. T. (2021) Enriching for rumen bacteria to degrade the Pimelea plant toxin simplexin, in an anaerobic in vitro fermenter. In: 33rd Australian Association of Animal Sciences Conference, 1-3 February 2021, Fremantle, Western Australia.

Ouwerkerk, D., Gravel, J. L., Maguire, A. J., Minchin, C. M., Klieve, A.V. and Gilbert, R. A. (2021) Changes in mixed microbial inoculums to prevent the toxic side-effects in cattle grazing new varieties of Leucaena. In: 33rd Australian Association of Animal Sciences Conference, 1-3 February 2021, Fremantle, Western Australia.

Premaratne, A., Zhang, H., Wang, R., Chinivasagam, N. H. and Billington, C. (2021) Phage Biotechnology to Mitigate Antimicrobial Resistance in Agriculture. In: Sustainable Agriculture Reviews 49: Mitigation of Antimicrobial Resistance Vol 2. Natural and Synthetic Approaches. Springer International Publishing, Cham. ISBN 978-3-030-58259-3

Turni, C., Meers, J., Parke, K., Singh, R., Yee, S., Templeton, J. M., Mone, N.K., Blackall, P. J. and Barnes, T.S. (2021) Pathogens associated with pleuritic pig lungs at an abattoir in Queensland Australia. Australian Veterinary Journal, 99 (5). pp. 163-171. ISSN 0005-0423

2020

Chinivasagam, H.N., Estella, W., Cockerill, S. A., Maddock, L., Mayer, D. G., Billington, C., Premaratne, A., Liang, L., Connerton, P. L. and Connerton, I. F. (2020) Moving from concept to control; use of phages for Campylobacter reduction. Project Report. AgriFutures.

Chinivasagam, H.N., Estella, W., Maddock, L., Mayer, D.G., Weyand, C., Connerton, P. L. and Connerton, I. F. (2020) Bacteriophages to Control Campylobacter in Commercially Farmed Broiler Chickens, in Australia. Frontiers in Microbiology, 11 (632). ISSN 1664-302X

Dixon, R. M. and Mayer, R. J. (2020) Estimating the voluntary intake by sheep of tropical grasses from digestibility, regrowth-age and leaf content: a meta-analysis. Animal Production Science, 60 . pp. 1694-1703.

Dixon, R. M., Shotton, P. and Mayer, R. J. (2020) Diets selected and growth of steers grazing buffel grass (Cenchrus ciliaris cv. Gayndah)–Centro (Centrosema brasilianum cv. Oolloo) pastures in a seasonally dry tropical environment. Animal Production Science, 60 (11). pp. 1459-1468.

Gilbert, R. A. and Ouwerkerk, D. (2020) Ruminal viruses and extrachromosomal genetic elements. In: Ruminal viruses and extrachromosomal genetic elements. Burleigh Dodds Series in Agricultural Science (83). Burleigh Dodds. ISBN 9781786763327

Gilbert, R. A., Townsend, E. M., Crew, K. S., Hitch, T. C. A., Friedersdorff, J. C. A., Creevey, C. J., Pope, P. B., Ouwerkerk, D. and Jameson, E. (2020) Rumen Virus Populations: Technological Advances Enhancing Current Understanding. Frontiers in Microbiology, 11 (450). ISSN 1664-302X

Grant, L. J., Mikkelsen, D., Phan, A. D. T., Kang, S., Ouwerkerk, D., Klieve, A. V., Gidley, M. J. and Williams, B. A. (2020) Purified plant cell walls with adsorbed polyphenols alter porcine faecal bacterial communities during in vitro fermentation. Food & Function, 11 (1). pp. 834-845. ISSN 2042-6496

Kidsley, A. K., White, R. T., Beatson, S. A., Saputra, S., Schembri, M. A., Gordon, D., Johnson, J. R., O’Dea, M., Mollinger, J. L., Abraham, S. and Trott, D. J. (2020) Companion Animals Are Spillover Hosts of the Multidrug-Resistant Human Extraintestinal Escherichia coli Pandemic Clones ST131 and ST1193. Frontiers in Microbiology, 11 (1968). ISSN 1664-302X

Loh, Z. H., Ouwerkerk, D., Klieve, A. V., Hungerford, N. L. and Fletcher, M. T. (2020) Toxin Degradation by Rumen Microorganisms: A Review. Toxins, 12 (10). ISSN 2072-6651

Mason, M. G., Blackall, P. J., Botella, J. R. and Templeton, J. M. (2020) An easy-to-perform, culture-free Campylobacter point-of-management assay for processing plant applications. Journal of Applied Microbiology, 128 (3). pp. 620-629. ISSN 1364-5072

Ooi, M. C., Goulden, E. F., Trotter, A. J., Smith, G. G. and Bridle, A. R. (2020) Aquimarina sp. Associated With a Cuticular Disease of Cultured Larval Palinurid and Scyllarid Lobsters. Frontiers in Microbiology, 11 (2395). ISSN 1664-302X

2019

Awawdeh, L., Turni, C., Henning, J., Allavena, R. E., Cobbold, R. N., Mollinger, J. L. and Gibson, J. S. (2019) An Optimized Protocol for Molecular Screening of Avian Pathogenic Escherichia Coli From Broiler Chickens in South East Queensland, Australia. The Journal of Applied Poultry Research, 28 (4). pp. 1370-1381. ISSN 1056-6171

Chinivasagam, H.N., Estella, W., Cockerill, S. A., Maddock, L., Mayer, D. G., Billington, C., Premaratne, A., Liang, L., Connerton, P. and Connerton, I. (2019) A biocontrol option to control a foodborne pathogen, using bacteriophages to control Campylobacter in poultry. Proceedings, 36 (1). p. 162. ISSN 2504-3900

Gavey, L. (2019) Producer motivations for and against engagement in surveillance. In: 2019 Australian Biosecurity Symposium, 12-13 June 2019, Gold Coast, Australia.

Gilbert, R. A. and Ouwerkerk, D. (2019) The genetics of rumen phage populations. Proceedings . ISSN 2504-3900

Gilbert, R. A., Ouwerkerk, D., Negara, W., Schatz, T., Klieve, A. and McCosker, K. D. (2019) Shifting cattle from grazing extensive pastures to floodplain pastures in the Northern Territory: Effect on rumen microbial communities. In: Proceedings of the Northern Beef Research Update Conference, 19-22 August 2019, Brisbane, Queensland, Australia.

Harriott, L., Wood, C., Gentle, M., Traub, R., Perkins, N., Tozer, S. and Cobbold, R. (2019) Occurrence of bacterial pathogens and antimicrobial resistance in peri-urban wild dogs. In: 1st Queensland Pest Animal and Weed Symposium, 20-23 May 2019, Gold Coast, Australia.

Hitch, T. C.A., Edwards, J. E. and Gilbert, R. A. (2019) Metatranscriptomics reveals mycoviral populations in the ovine rumen. FEMS Microbiology Letters, 366 (13). ISSN 0378-1097

Loh, Z.H., Hungerford, N.L., Ouwerkerk, D., Klieve, A.V. and Fletcher, M.T. (2019) Mitigating the Effects of the Toxin Simplexin in Pimelea Poisoning of Cattle by Development of a Microbial Probiotic. In: 4th Queensland Annual Chemistry Symposium QACS 2019, 29th November 2019, University of Queensland, Brisbane.

Netzel, G., Tan, E. T. T., Yin, M., Giles, C., Yong, K. W. L., Al Jassim, R. and Fletcher, M. T. (2019) Bioaccumulation and Distribution of Indospicine and Its Foregut Metabolites in Camels Fed Indigofera spicata. Toxins (Basel), 11 (3). ISSN 2072-6651

Ouwerkerk, D., Maguire, A. J., Gravel, J. L., Minchin, C. M., Gravel, M., Klieve, A. and Gilbert, R. A. (2019) Effect of Feeding Different Cultivars of Leucaena leucocephala on Rumen-Based in vitro Anaerobic Fermentations. Proceedings, 36 (1). p. 96. ISSN 2504-3900

Rice, S. J., Baker, D. K. and Leemon, D. M. (2019) Development of mycoinsecticide formulations with Beauveria bassiana and Metarhizium anisopliae for the control of lesser mealworm, Alphitobius diaperinus, in chicken broiler houses. BioControl, 64 (5). pp. 489-500. ISSN 1573-8248

Turner, S. (2019) Veterinary laboratory user's guide. Manual. State of Queensland.

Yuan, Y., Gauthier, E., Hungerford, N.L., Ouwerkerk, D., Fletcher, M.T. and Laycock, B. (2019) Modelling the controlled release of toxins in a rumen environment. In: 4th Queensland Annual Chemistry Symposium QACS 2019, 29th November 2019, University of Queensland, Brisbane.

Yuan, Y., Gauthier, E., Hungerford, N. L., Ouwerkerk, D., Fletcher, M. T. and Laycock, B. (2019) Modelling the Controlled Release of Toxins in a Rumen Environment. Proceedings, 36 (1). p. 89. ISSN 2504-3900

2018

Edson, D. W., Field, H., McMichael, L., Mayer, D. G., Martin, J., Welbergen, J., McLaughlin, A., Huth, L., Kristoffersen, J., Tsoukalas, G. and Kirkland, P. (2018) Hematology, plasma biochemistry, and urinalysis of free-ranging grey-headed flying foxes (Pteropus poliocephalus) in Australia. Journal of Zoo and Wildlife Medicine, 49 (3). pp. 591-598. ISSN 1042-7260

Kawasaki, M., Delamare-Deboutteville, J., Bowater, R. O., Walker, M. J., Beatson, S., Ben Zakour, N. L. and Barnes, A. C. (2018) Microevolution of Streptococcus agalactiae ST-261 from Australia indicates dissemination via imported tilapia and ongoing adaptation to marine hosts or environment. Applied and Environmental Microbiology, 84 (16), e00859-18. ISSN 00992240 (ISSN)

Mukhopadhya, I., Morais, S., Laverde-Gomez, J., Sheridan, P. O., Walker, A. W., Kelly, W., Klieve, A. V., Ouwerkerk, D., Duncan, S. H., Louis, P., Koropatkin, N., Cockburn, D., Kibler, R., Cooper, P. J., Sandoval, C., Crost, E., Juge, N., Bayer, E. A. and Flint, H. J. (2018) Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii. Environmental microbiology, 20 (1). pp. 324-336. ISSN 1462-2912

Schofield, B. J., Lachner, N., Le, O. T., McNeill, D. M., Dart, P., Ouwerkerk, D., Hugenholtz, P. and Klieve, A. V. (2018) Beneficial changes in rumen bacterial community profile in sheep and dairy calves as a result of feeding the probiotic Bacillus amyloliquefaciens H57. Journal of Applied Microbiology, 124 (3). pp. 855-866. ISSN 1365-2672

Seshadri, R., Leahy, S. C., Attwood, G. T., Teh, K. H., Lambie, S. C., Cookson, A. L., Eloe-Fadrosh, E. A., Pavlopoulos, G. A., Hadjithomas, M., Varghese, N. J., Paez-Espino, D., Hungate project, c., Perry, R., Henderson, G., Creevey, C. J., Terrapon, N., Lapebie, P., Drula, E., Lombard, V., Rubin, E., Kyrpides, N. C., Henrissat, B., Woyke, T., Ivanova, N. N. and Kelly, W. J. (2018) Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nature Biotechnology, 36 (4). pp. 359-367.

Sun, X., Kung, N. Y. H., Gao, L., Liu, Y., Zhan, S., Qi, X., Wang, X., Dong, X., Jia, Z. and Morris, R. (2018) Social network analysis for poultry HPAI transmission. Transboundary and Emerging Diseases, 65 (6). pp. 1909-1919. ISSN 18651674 (ISSN)

Weeks, E. N.I., Machtinger, E. T., Leemon, D. and Geden, C. J. (2018) Biological control of livestock pests: Entomopathogens. Wageningen Academic Publishers.

Yee, S., Blackall, P. J. and Turni, C. (2018) Genetic diversity and toxin gene distribution among serovars of Actinobacillus pleuropneumoniae from Australian pigs. Australian Veterinary Journal, 96 (1-2). pp. 17-23. ISSN 0005-0423

2017

Bowen, M. K., Poppi, D. and McLennan, S. (2017) Efficiency of rumen microbial protein synthesis in cattle grazing tropical pastures as estimated by a novel technique. Animal Production Science, 57 (8). pp. 1702-1712. ISSN 1836-5787

Gilbert, R. A., Kelly, W. J., Altermann, E., Leahy, S. C., Minchin, C., Ouwerkerk, D. and Klieve, A. V. (2017) Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria. Frontiers in Microbiology, 8 (2340). ISSN 1664-302X

Nelson, L. J., Seeman, O. D. and Shinwari, M. W. (2017) Psorergatoides cf. kerivoulae (Acari: Psorergatidae) induces cutaneous lesions on the wings of Myotis macropus (Chiroptera: Vespertilionidae). Systematic and Applied Acarology, 22 (3). pp. 446-448. ISSN 1362-1971

2016

O'Hara, P. J., Klieve, A. V., Murray, P. J., Maguire, A. J., Ouwerkerk, D. and Harper, K. (2016) Effect of time and diet change on the bacterial community structure throughout the gastrointestinal tract and in faeces of the northern brown bandicoot, Isoodon macrourus. Australian Journal of Zoology, 64 (1). p. 48. ISSN 0004-959X

Schofield, B. J., Skarshewski, A., Lachner, N., Ouwerkerk, D., Klieve, A. V., Dart, P. and Hugenholtz, P. (2016) Near complete genome sequence of the animal feed probiotic, Bacillus amyloliquefaciens H57. Standards in Genomic Sciences, 11 (1). pp. 1-7. ISSN 1944-3277

2015

Dayao, D. A., Dawson, S., Kienzle, M. J., Gibson, J. S., Blackall, P. J. and Turni, C. (2015) Variation in the antimicrobial susceptibility of actinobacillus pleuropneumoniae isolates in a pig, within a batch of pigs, and among batches of pigs from one farm. Microbial Drug Resistance, 21 (4). pp. 491-6. ISSN 1076-6294

De Barbieri, I., Gulino, L., Hegarty, R.S., Oddy, V.H., Maguire, A., Li, L., Klieve, A.V. and Ouwerkerk, D. (2015) Production attributes of Merino sheep genetically divergent for wool growth are reflected in differing rumen microbiotas. Livestock Science, 178 . pp. 119-129. ISSN 18711413

Gilbert, R. A. and Klieve, A. V. (2015) Ruminal Viruses (Bacteriophages, Archaeaphages). In: Rumen Microbiology: From Evolution to Revolution. Springer.

Gilbert, R. A., Ouwerkerk, D. and Klieve, A. V. (2015) Phage therapy in livestock methane amelioration. In: Livestock production and climate change. Cabi. ISBN 9781780644325

Guo, S., Wakeham, D., Brouwers, H. J. M., Cobbold, R. N., Abraham, S., Mollinger, J. L., Johnson, J. R., Chapman, T. A., Gordon, D. M., Barrs, V. R. and Trott, D. J. (2015) Human-associated fluoroquinolone-resistant Escherichia coli clonal lineages, including ST354, isolated from canine feces and extraintestinal infections in Australia. Microbes and Infection, 17 (4). pp. 266-274.

Henderson, G., Cox, F., Ganesh, S., Jonker, A., Young, W., Janssen, P.H. and Ouwerkerk, D. (2015) Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range. Scientific Reports, 5 . p. 14567.

Koya, A., de Wet, S. C., Turner, S., Cawdell-Smith, J., Venus, B., Greer, R. M., Lew-Tabor, A. E. and Boe-Hansen, G. B. (2015) Evaluation and histological examination of a Campylobacter fetus subsp. venerealis small animal infection model. Research in Veterinary Science, 99 . pp. 1-9.

Morales-Erasto, V., Maruri-Esteban, E., Trujillo-Ruíz, H. H., Talavera-Rojas, M., Blackall, P. J. and Soriano-Vargas, E. (2015) Protection Conferred by Infectious Coryza Vaccines Against Emergent Avibacterium paragallinarum Serovar C-1. Avian Diseases, 59 (1). pp. 162-164. ISSN 0005-2086

Navarro, M., Stanley, R., Cusack, A. and Sultanbawa, Y. (2015) Combinations of plant-derived compounds against Campylobacter in vitro. The Journal of Applied Poultry Research, 24 (3). pp. 352-363.

Tan, E.T.T., Fletcher, M. T., D'arcy, B.R. and Al Jassim, R. (2015) In vitro degradation of hepatotoxic indospicine in indigofera spicata by camel foregut fluid. In: 4th international conference of ISOCARD, 2015, Almaty Kazakhstan.

2014

Barnard, R., Liang, F., Wong, L., Weis, A., Templeton, J. M. and Blackall, P. J. (2014) Genotyping of Campylobacter jejuni using a novel Polymerase-Chain-Reaction-Microsphere approach. New Biotechnology, 31, Su . S104.

Dayao, D. A. E., Kienzle, M., Gibson, J. S., Blackall, P. J. and Turni, C. (2014) Use of a proposed antimicrobial susceptibility testing method for Haemophilus parasuis. Veterinary Microbiology, 172 (3-4). p. 586. ISSN 03781135

Turni, C., Singh, R., Schembri, M.A. and Blackall, P.J. (2014) Evaluation of a multiplex PCR to identify and serotypeActinobacillus pleuropneumoniaeserovars 1, 5, 7, 12 and 15. Letters in Applied Microbiology, 59 (4). pp. 362-369. ISSN 02668254

2013

Gulino, L. M., Ouwerkerk, D., Kang, A. Y. H., Maguire, A. J., Kienzle, M. and Klieve, A. V. (2013) Shedding Light on the Microbial Community of the Macropod Foregut Using 454-Amplicon Pyrosequencing. Plos One, 8 (4). ISSN 1932-6203

Harper, K., Costa, D., Gulino, L.-M., Klieve, A., McLennan, S., Quigley, S. and Poppi, D. (2013) The association between liveweight gain and rumen microbial diversity in cattle. In: Northern Beef Research Update Conference 2013, Cairns, Australia.

2012

Blackall, P.J. (2012) Veterinary Microbiology - Brave New Worlds and Forgotten Frontiers. In: Annual Scientific Meeting of the Australian Society for Microbiology, Brisbane / Brisbane Convention Centre.

Cooper, A., Goullet, M., Mitchell, J., Ketheesan, N. and Govan, B. (2012) Serological evidence of Coxiella burnetii exposure in native marsupials and introduced animals in Queensland, Australia. Epidemiology and Infection, 140 (7). pp. 1304-1308. ISSN 0950-2688

Eigeland, K. A., Lanyon, J. M., Trott, D. J., Ouwerkerk, D., Blanshard, W., Milinovich, G. J., Gulino, L. M., Martinez, E., Merson, S. and Klieve, A. V. (2012) Bacterial Community Structure in the Hindgut of Wild and Captive Dugongs (Dugong dugon). Aquatic Mammals, 38 (4). pp. 402-411. ISSN 0167-5427

Klieve, A. V., Ouwerkerk, D. and Maguire, A. J. (2012) Archaea in the foregut of macropod marsupials: PCR and amplicon sequence-based observations. Journal of Applied Microbiology, 113 (5). pp. 1065-1075. ISSN 1364-5072

Leemon, D. M. and Jonsson, N.N. (2012) Comparative studies on the invasion of cattle ticks (Rhipicephalus (Boophilus) microplus) and sheep blowflies (Lucilia cuprina) by Metarhizium anisopliae (Sorokin). Journal of Invertebrate Pathology, 109 (2). pp. 248-259.

Millard, C. M., Balano, J. C.F., Chan, C., Yuen, B., Aviles, F., Landos, M., Chong, R. S.M., Benedict, S. and Barnes, A. C. (2012) Evolution of the capsular Operon of Streptococcus iniae in response to vaccination. Applied and Environmental Microbiology, 78 (23). pp. 8219-8226. ISSN 0099-2240

Platell, J.L., Johnson, J.R., Cobbold, R.N. and Trott, D.J. (2012) Multidrug-resistant extraintestinal pathogenic Escherichia coli of sequence type ST131 in animals and foods. Veterinary Microbiology, 153 (1-2). pp. 99-108.

2011

Bisgaard, M., Blackall, P. and Christensen, H. (2011) Pasteurellaceae from kangaroos form a diverse but separate phylogenetic line. In: International Pasteurellaceae Conference 2011, Elsinore, Denmark.

Ouwerkerk, D., Gilbert, R. A. and Klieve, A. (2011) Archaeaphage therapy to control rumen methanogens. Project Report. Meat & Livestock Australia Limited.

Platell, J. L., Johnson, J. R., Cobbold, R. N. and Trott, D. J. (2011) Multidrug-resistant extraintestinal pathogenic Escherichia coli of sequence type ST131 in animals and foods. Veterinary Microbiology, 153 (1-2). pp. 99-108. ISSN 0378-1135

Torok, V. A., Hughes, R. J., Mikkelsen, L. L., Perez-Maldonado, R., Balding, K., MacAlpine, R., Percy, N. J. and Ophel-Keller, K. (2011) Identification and Characterization of Potential Performance-Related Gut Microbiotas in Broiler Chickens across Various Feeding Trials. Applied and Environmental Microbiology, 77 (17). pp. 5868-5878.

2010

Chinivasagam, H.N., Redding, M., Runge, G. and Blackall, P.J. (2010) Presence and incidence of food-borne pathogens in Australian chicken litter. British Poultry Science, 51 (3). pp. 311-318.

Joachimsthal, E.L., Reeves, R.K.H., Hung, J., Nielsen, L. K., Ouwerkerk, D., Klieve, A. V. and Vickers, C.E. (2010) Production of bacteriocins by Streptococcus bovis strains from Australian ruminants. Journal of Applied Microbiology, 108 (2). pp. 428-436. ISSN 13645072 (ISSN)

Milinovich, G. J., Klieve, A. V., Pollitt, C. C. and Trott, D. J. (2010) Microbial Events in the Hindgut During Carbohydrate-induced Equine Laminitis. Veterinary Clinics of North America-Equine Practice, 26 (1). 79-+. ISSN 0749-0739

Smith, C., de Jong, C. and Field, H. (2010) Sampling small quantities of blood from microbats. Acta Chiropterologica, 12 (1). pp. 255-258. ISSN 1508-1109

Turni, C. and Blackall, P.J. (2010) Serovar profiling of Haemophilus parasuis on Australian farms by sampling live pigs. Australian Veterinary Journal, 88 (7). pp. 255-259. ISSN 0005-0423

Turni, C., Pyke, M. and Blackall, P.J. (2010) Validation of a real-time PCR forHaemophilus parasuis. Journal of Applied Microbiology, 108 (4). pp. 1323-1331. ISSN 13645072

2009

Kurscheid, S., Lew-Tabor, A. E., Rodriguez Valle, M., Bruyeres, A. G., Doogan, V. J., Munderloh, U. G., Guerrero, F. D., Barrero, R. A. and Bellgard, M. I. (2009) Evidence of a tick RNAi pathway by comparative genomics and reverse genetics screen of targets with known loss-of-function phenotypes in Drosophila. BMC Molecular Biology, 10 , 26. ISSN 1471-2199

Moolhuijzen, P. M., Lew-Tabor, A. E., Wlodek, B. M., Agüero, F. G., Comerci, D. J., Ugalde, R. A., Sanchez, D. O., Appels, R. and Bellgard, M. (2009) Genomic analysis of Campylobacter fetus subspecies: Identification of candidate virulence determinants and diagnostic assay targets. BMC Microbiology, 9 , 86. ISSN 1471-2180

Morgan, J.A.T., Morris, G.M., Wlodek, B.M., Byrnes, R., Jenner, M., Constantinoiu, C.C., Anderson, G.R., Lew-Tabor, A. E., Molloy, J.B., Gasser, R.B. and Jorgensen, W.K. (2009) Real-time polymerase chain reaction (PCR) assays for the specific detection and quantification of seven Eimeria species that cause coccidiosis in chickens. Molecular and Cellular Probes, 23 (2). pp. 83-89. ISSN 0890-8508

2008

Chinivasagam, H.N. and Runge, G. (2008) Food-borne pathogens and animal botulism issues surrounding the on-farm composting of layer chicken waste and mortalities – a review. Technical Report. State of Queensland.

Milinovich, G. J., Burrell, P. C., Pollitt, C. C., Bouvet, A. and Trott, D. J. (2008) Streptococcus henryi sp. nov. and Streptococcus caballi sp. nov., isolated from the hindgut of horses with oligofructuose-induced laminitis. International Journal of Systematic and Evolutionary Microbiology, 58 (1). pp. 262-266. ISSN 1466-5034

2007

Blackall, P.J., O'Dell, R. and Stephens, C.P. (2007) Minimal inhibitory concentration of tilmicosin against isolates of Histophilus somni from Australian cattle. Australian Veterinary Journal, 85 (12). pp. 503-504. ISSN 0005-0423

Oakey, H.J. (2007) A universal test to determine the integrity of RNA, and its suitability for reverse transcription, in animal tissue laboratory specimens. Journal of Veterinary Diagnostic Investigation, 19 (5). pp. 459-464.

2006

Chen, A.Y., Fry, S.R., Forbes-Faulkner, J., Daggard, G.E. and Mukkur, T.K.S. (2006) Comparative immunogenicity of M. hyopneumoniae NrdF encoded in different expression systems delivered orally via attenuated S. typhimurium aroA in mice. Veterinary Microbiology, 114 (3-4). pp. 252-259.

Xu, F., Chen, X., Shi, A., Yang, B., Wang, J., Li, Y., Guo, X., Blackall, P.J. and Yang, H. (2006) Characterization and immunogenicity of an apxIA mutant of Actinobacillus pleuropneumoniae. Veterinary Microbiology, 118 (3-4). pp. 230-239. ISSN 0378-1135

2005

Berens, S. J., Brayton, K. A., Molloy, J. B., Bock, R. E., Lew, A. E. and McElwain, T. F. (2005) Merozoite surface antigen 2 proteins of Babesia bovis vaccine breakthrough isolates contain a unique hypervariable region composed of degenerate repeats. Infection and immunity, 73 (11). pp. 7180-7189. ISSN 0019-95671098-5522

Bettelheim, K.A., Kuzevski, A., Gilbert, R. A., Krause, D.O. and McSweeney, C.S. (2005) The diversity of Escherichia coli serotypes and biotypes in cattle faeces. Journal of Applied Microbiology, 98 (3). pp. 699-709. ISSN 1364-5072

Burow, L.C., Gobius, K.S., Vanselow, B.A. and Klieve, A.V. (2005) A lack of predatory interaction between rumen ciliate protozoa and Shiga-toxin producing Escherichia coli. Letters in Applied Microbiology, 40 . pp. 117-122.

Cai, X., Chen, H., Blackall, P.J., Yin, Z., Wang, L., Liu, Z. and Jin, M. (2005) Serological characterization of Haemophilus parasuis isolates from China. Veterinary Microbiology, 111 (3-4). pp. 231-236. ISSN 0378-1135

Do, T., Stephens, C., Townsend, K., Wu, X., Chapman, T., Chin, J., McCormick, B., Bara, M. and Trott, D.J. (2005) Rapid identification of virulence genes in enterotoxigenic Escherichia coli isolates associated with diarrhoea in Queensland piggeries. Australian Veterinary Journal, 83 (5). pp. 293-299. ISSN 0005-0423

Klieve, A. V. and Gilbert, R. A. (2005) Bacteriophage populations. In: Methods in Gut Microbial Ecology for Ruminants. Springer.

Lancashire, J. F., Terry, T. D., Blackall, P. J. and Jennings, M. P. (2005) Plasmid-encoded Tet B tetracycline resistance in Haemophilus parasuis. Antimicrobial agents and chemotherapy, 49 (5). pp. 1927-1931. ISSN 0066-48041098-6596

Mahony, T. J., McCarthy, F. M., Gravel, J. L., Corney, B., Young, P. L. and Vilcek, S. (2005) Genetic analysis of bovine viral diarrhoea viruses from Australia. Veterinary Microbiology, 106 (1-2). pp. 1-6. ISSN 0378-1135

Mahony, T. J., McCarthy, F. M., Gravel, J. L. and Young, P. L. (2005) Construction of a Gene Inactivation Library for Bovine herpesvirus 1 Using Infectious Clone Technology. In: DNA viruses: methods and protocols. Methods in Molecular Biology (292). Humana Press. ISBN 978-1-58829-353-4

Ouwerkerk, D., Klieve, A. V., Forster, R.J., Templeton, J. M. and Maguire, A. J. (2005) Characterization of culturable anaerobic bacteria from the forestomach of an eastern grey kangaroo, Macropus giganteus. Letters in Applied Microbiology, 41 (4). pp. 327-333. ISSN 1472-765X

Stephens, C. P., Oxberry, S. L., Phillips, N. D., La, T. and Hampson, D. J. (2005) The use of multilocus enzyme electrophoresis to characterise intestinal spirochaetes (Brachyspira spp.) colonising hens in commercial flocks. Veterinary Microbiology, 107 (1-2). pp. 149-157. ISSN 0378-1135

Townsend, K. M., Giang, V. N., Stephens, C., Scott, P. T. and Trott, D. J. (2005) Application of nox-restriction fragment length polymorphism for the differentiation of Brachyspira intestinal spirochetes isolated from pigs and poultry in Australia. Journal of Veterinary Diagnostic Investigation, 17 (2). pp. 103-109. ISSN 1040-6387

2003

Bettelheim, K. A., Kuzevski, A., Gilbert, R. A., Krause, D.O. and McSweeney, C. S. (2003) The diversity of Escherichia coli serotypes and biotypes in cattle faeces and the effects of diet-induced changes. In: Microbiology: Art in Science, Joint Meeting of the Australian and New Zealand Societies for Microbiology, 28 September - 2 October 2003, Auckland, New Zealand.

Klieve, A.V., Hennessy, D., Ouwerkerk, D., Forster, R.J., Mackie, R.I. and Attwood, G.T. (2003) Establishing populations of Megasphaera elsdenii YE 34 and Butyrivibrio fibrisolvens YE 44 in the rumen of cattle fed high grain diets. Journal of Applied Microbiology, 95 (3). pp. 621-630.

2002

Hornitzky, M. A., Vanselow, B. A., Walker, K., Bettelheim, K. A., Corney, B., Gill, P., Bailey, G. and Djordjevic, S. P. (2002) Virulence properties and serotypes of Shiga toxin-producing Escherichia coli from healthy Australian cattle. Applied and environmental microbiology, 68 (12). pp. 6439-6445. ISSN 0099-22401098-5336

Klieve, A. V., Ouwerkerk, D., Turner, A. and Roberton, R. (2002) The production and storage of a fermentor-grown bacterial culture containing Synergistes jonesii, for protecting cattle against mimosine and 3-hydroxy-4(1H)-pyridone toxicity from feeding on Leucaena leucocephala. Australian Journal of Agricultural Research, 53 (1). pp. 1-5.

Lew, A.E., Bock, R.E., Minchin, C. M. and Masaka, S. (2002) A msp1α polymerase chain reaction assay for specific detection and differentiation of Anaplasma marginale isolates. Veterinary Microbiology, 86 (4). pp. 325-335. ISSN 0378-1135

Lew, A.E., Bock, R.E., Minchin, C. M. and Masaka, S. (2002) Erratum to "A msp1 alpha polymerase chain reaction assay for specific detection and differentiation of Anaplasma marginale isolates" [Vet Microbiol. 86 (2002) 325-335]. Veterinary Microbiology, 87 (4). pp. 365-366. ISSN 0378-1135

Lew, A.E., Dluzewski, A.R., Johnson, A.M. and Pinder, J.C. (2002) Myosins of Babesia bovis: molecular characterisation, erythrocyte invasion, and phylogeny. Cell Motility and the Cytoskeleton, 52 (4). pp. 202-220. ISSN 1949-3592

Mackie, R.I., Aminov, R.I., Hu, W., Olsen, M., Klieve, A. V. and Kamagata, Y. (2002) Molecular Ecology of Oscillospira guillermondii - a large, morphologically conspicuous, but uncultured rumen bacterium. Reproduction Nutrition Development, 42 (S1). S7-S8. ISSN 0926-5287

Mackie, R.I., McSweeney, C.S. and Klieve, A. V. (2002) Microbial ecology of the ovine rumen. In: Sheep Nutrition. CSIRO, 385 pages. ISBN 978-0-85199-595-3

Stephens, C. P. and Hampson, D. J. (2002) Experimental infection of broiler breeder hens with the intestinal spirochaete Brachyspira ( Serpulina ) pilosicoli causes reduced egg production. Avian Pathology, 31 (2). pp. 169-175. ISSN 0307-9457

2001

Forster, R.J., Klieve, A. V. and Ouwerkerk, D. (2001) Advances in evaluating and altering the rumen microbial ecosystem. In: Recent advances in animal nutrition in Australia 2001, 16th Symposium, Armidale, Australia. Animal Science, University of New England, Australia. ISBN 1-8638-9743-7

2000

Attwood, G. T. and Klieve, A. V. (2000) Molecular techniques for monitoring bacterial and bacteriophage populations in the rumen. In: Microbial Biosystems: New Frontiers. Proceedings of the 8th International Symposium on Microbial Ecology (1998). Atlantic Canadian Society for Microbial Ecology, Canada. ISBN 9780968676332

Gilbert, R. A., Klieve, A. V. and Nolan, J. V. (2000) Survival of phage particles in the rumen ecosystem. In: Australian Society for Microbiology Annual Scientific Meeting, 8-13 July 2000, Cairns, Queensland.

1999

Blackall, L.L., Blackall, P. J., Browning, J., Burn, T., Crocetti, G. and Miflin, J. (1999) Unusual bacteria apparently association with respiratory disease in ostriches and a turkey. In: Forty-eighth Western Poultry Disease Conference, 24-27 April 1999, Vancouver, Canada.

Blackall, P. J. (1999) Infectious coryza: Overview of the disease and new diagnostic options. Clinical Microbiology Reviews, 12 (4). pp. 627-632. ISSN 0893-8512

McCarthy, F.M., Smith, G.A. and Mattick, J.S. (1999) Molecular characterisation of Australian bovine enteroviruses. Veterinary Microbiology, 68 (1-2). pp. 71-81. ISSN 0378-1135

1998

Attwood, G. T., Klieve, A. V., Ouwerkerk, D. and Patel, B. K. (1998) Ammonia-hyperproducing bacteria from New Zealand ruminants. Applied and environmental microbiology, 64 (5). pp. 1796-1804. ISSN 0099-22401098-5336

Attwood, G. T., Klieve, A. V., Ouwerkerk, D. and Patel, B. K.C. (1998) Ammonia-hyperproducing bacteria from New Zealand ruminants. Applied and Environmental Microbiology, 64 (5). pp. 1796-1804. ISSN 0099-2240

1997

Heine, H. G., Foord, A. J., Young, P. L., Hooper, P. T., Lehrbach, P. R. and Boyle, D. B. (1997) Recombinant fowlpox virus vaccines against Australian virulent Marek's disease virus: gene sequence analysis and comparison of vaccine efficacy in specific pathogen free and production chickens. Virus Research, 50 (1). pp. 23-33. ISSN 0168-1702

Tierney, T.J., Trevella, W. and Simpson-Morgan, M.W. (1997) The cellular response of lambs to Brucella ovis before and after birth. Veterinary Immunology and Immunopathology, 59 (3-4). pp. 369-373. ISSN 1873-2534

1996

Blackall, P., Pahoff, J., Fegan, N. and Marr, G. (1996) Application of molecular fingerprinting to studies on outbreaks of porcine pasteurellosis and pleuropneumonia. Agri Practice, 17 (10). pp. 23-27.

Corney, B.G., McClintock, C.S., Colley, J. and Elder, J.K. (1996) Genotypes of Leptospira isolated from Queensland cattle. Australian Veterinary Journal, 73 (2). pp. 75-76. ISSN 0005-0423

Klieve, A. V., Swain, R. A. and Nolan, J. V. (1996) Bacteriophages in the rumen: types present, population size and implications for the efficiency of feed utilisation. Proceedings of the Australian Society of Animal Production, 21 . pp. 92-94.

Swain, R. A., Klieve, A. V. and Nolan, J. V. (1996) Factors affecting the rumen bacteriophage population. Proceedings of the Australian Society of Animal Production, 21 . p. 409.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1996) Effect of tannic acid on the bacteriophage populations within sheep rumen. In: Microbiology Australia, International meeting and exhibition of the Australian and New Zealand societies for microbiology, Christchurch, New Zealand.

1995

Blackall, P. J., Asakawa, T., Graydon, R.J., White, M., Adamson, M., Wade, L.K. and Lowe, L.B. (1995) In-vitro antibacterial properties of tilmicosin against Australian isolates of Pasteurella multocida and Actinobacillus pleuropneumoniae from pigs. Australian Veterinary Journal, 72 (1). pp. 35-36. ISSN 0005-0423

Bock, R.E., de Vos, A.J., Lew, A., Kingston, T.G. and Fraser, I.R. (1995) Studies on failure of T strain live Babesia bovis vaccine. Australian Veterinary Journal, 72 (8). pp. 296-300. ISSN 0005-0423

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1995) Tannic acid reduces bacteriophage numbers in rumen bacterial cultures. In: Bryant 70th Symposium, Illinois, USA.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1995) Tannic acid reduces bacteriophage numbers in rumen bacterial cultures. In: Australian Society for Microbiology Annual Scientific Meeting, 24-29 September 1995, Canberra, ACT, Australia..

1994

Eaves, F.W., Molloy, J.B., Dimmock, C.K. and Eaves, L.E. (1994) A field evaluation of the polymerase chain reaction procedure for the detection of bovine leukaemia virus proviral DNA in cattle. Veterinary Microbiology, 39 (3-4). pp. 313-321. ISSN 0378-1135

1993

Corney, B. G., Colley, J., Djordjevic, S. P., Whittington, R. and Graham, G. C. (1993) Rapid identification of some Leptospira isolates from cattle by random amplified polymorphic DNA fingerprinting. Journal of clinical microbiology, 31 (11). pp. 2927-2932. ISSN 0095-11371098-660X

Klieve, A. V., Swain, R. A. and Nolan, J. V. (1993) Natural variability and diurnal fluctuation of bacteriophage populations in the rumen. In: 22nd Biennial Conference on Rumen Function, November 9-11, 1993, Chicago, USA.

1990

Blackall, P. J., Eaves, L. E. and Rogers, D. G. (1990) Proposal of a new serovar and altered nomenclature for Haemophilus paragallinarum in the Kume hemagglutinin scheme. Journal of clinical microbiology, 28 (6). pp. 1185-1187. ISSN 0095-11371098-660X

1985

Duffield, B.J. and Young, D.A. (1985) Survival of Mycobacterium bovis in defined environmental conditions. Veterinary Microbiology, 10 (2). pp. 193-197. ISSN 0378-1135

1969

Elder, J.K. and Hall, W.T.K. (1969) Experimental infection of cattle with Tri trichomonas foetus var. Brisbane. Queensland Journal of Agricultural and Animal Sciences, 26 (4). pp. 671-675.

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