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Alhamami, T., Chowdhury, P. R., Gomes, N., Carr, M., Veltman, T., Khazandi, M., Mollinger, J. L., Deutscher, A. T., Turni, C., Mahdi, L., Venter, H., Abraham, S., Djordjevic, S. P. and Trott, D. J. (2021) First Emergence of Resistance to Macrolides and Tetracycline Identified in Mannheimia haemolytica and Pasteurella multocida Isolates from Beef Feedlots in Australia. Microorganisms, 9 (6). p. 1322. ISSN 2076-2607

Alhamami, T., Roy Chowdhury, P., Gomes, N., Carr, M., Veltman, T., Khazandi, M., Mollinger, J. L., Deutscher, A. T., Turni, C., Mahdi, L., Venter, H., Abraham, S., Djordjevic, S. P. and Trott, D. J. (2022) Correction: Alhamami et al. First Emergence of Resistance to Macrolides and Tetracycline Identified in Mannheimia haemolytica and Pasteurella multocida Isolates from Beef Feedlots in Australia. Microorganisms 2021, 9, 1322. Microorganisms, 10 (4). ISSN 2076-2607

Ambrose, R., Blakebrough-Hall, C., Gravel, J. L., Gonzalez, L. A. and Mahony, T. J. (2022) Characterisation of the Upper Respiratory Tract Virome of Feedlot Cattle and its Association with Bovine Respiratory Disease. Preprints . p. 2022120438.

Ambrose, R., Blakebrough-Hall, C., Gravel, J. L., Gonzalez, L. A. and Mahony, T. J. (2023) Characterisation of the Upper Respiratory Tract Virome of Feedlot Cattle and its Association with Bovine Respiratory Disease. Preprints, 15 (2). p. 455.

Attwood, G. T., Klieve, A. V., Ouwerkerk, D. and Patel, B. K. (1998) Ammonia-hyperproducing bacteria from New Zealand ruminants. Applied and environmental microbiology, 64 (5). pp. 1796-1804. ISSN 0099-22401098-5336

Attwood, G. T., Klieve, A. V., Ouwerkerk, D. and Patel, B. K.C. (1998) Ammonia-hyperproducing bacteria from New Zealand ruminants. Applied and Environmental Microbiology, 64 (5). pp. 1796-1804. ISSN 0099-2240

Awawdeh, L., Turni, C., Henning, J., Allavena, R. E., Cobbold, R. N., Mollinger, J. L. and Gibson, J. S. (2019) An Optimized Protocol for Molecular Screening of Avian Pathogenic Escherichia Coli From Broiler Chickens in South East Queensland, Australia. The Journal of Applied Poultry Research, 28 (4). pp. 1370-1381. ISSN 1056-6171

Awawdeh, L., Turni, C., Mollinger, J. L., Henning, J., Cobbold, R. N., Trott, D. J. and Gibson, J. S. (2022) Antimicrobial susceptibility, plasmid replicon typing, phylogenetic grouping, and virulence potential of avian pathogenic and faecal Escherichia coli isolated from meat chickens in Australia. Avian Pathology . pp. 1-32. ISSN 0307-9457

Bajagai, Y. S., Yeoh, Y. K., Li, X., Zhang, D., Dennis, P. G., Ouwerkerk, D., Dart, P. J., Klieve, A. V. and Bryden, W. L. (2023) Enhanced meat chicken productivity in response to the probiotic Bacillus amyloliquefaciens H57 is associated with the enrichment of microbial amino acid and vitamin biosynthesis pathways. Journal of Applied Microbiology, 134 (5). ISSN 1364-5072

Barnard, R., Liang, F., Wong, L., Weis, A., Templeton, J. M. and Blackall, P. J. (2014) Genotyping of Campylobacter jejuni using a novel Polymerase-Chain-Reaction-Microsphere approach. New Biotechnology, 31, Su . S104.

Berens, S. J., Brayton, K. A., Molloy, J. B., Bock, R. E., Lew, A. E. and McElwain, T. F. (2005) Merozoite surface antigen 2 proteins of Babesia bovis vaccine breakthrough isolates contain a unique hypervariable region composed of degenerate repeats. Infection and immunity, 73 (11). pp. 7180-7189. ISSN 0019-95671098-5522

Bettelheim, K.A., Kuzevski, A., Gilbert, R. A., Krause, D.O. and McSweeney, C.S. (2005) The diversity of Escherichia coli serotypes and biotypes in cattle faeces. Journal of Applied Microbiology, 98 (3). pp. 699-709. ISSN 1364-5072

Blackall, P., Pahoff, J., Fegan, N. and Marr, G. (1996) Application of molecular fingerprinting to studies on outbreaks of porcine pasteurellosis and pleuropneumonia. Agri Practice, 17 (10). pp. 23-27.

Blackall, P. J., Eaves, L. E. and Rogers, D. G. (1990) Proposal of a new serovar and altered nomenclature for Haemophilus paragallinarum in the Kume hemagglutinin scheme. Journal of clinical microbiology, 28 (6). pp. 1185-1187. ISSN 0095-11371098-660X

Blackall, P.J., O'Dell, R. and Stephens, C.P. (2007) Minimal inhibitory concentration of tilmicosin against isolates of Histophilus somni from Australian cattle. Australian Veterinary Journal, 85 (12). pp. 503-504. ISSN 0005-0423

Blackall, P. J. (1999) Infectious coryza: Overview of the disease and new diagnostic options. Clinical Microbiology Reviews, 12 (4). pp. 627-632. ISSN 0893-8512

Bowen, M. K., Poppi, D. and McLennan, S. (2017) Efficiency of rumen microbial protein synthesis in cattle grazing tropical pastures as estimated by a novel technique. Animal Production Science, 57 (8). pp. 1702-1712. ISSN 1836-5787

Burow, L.C., Gobius, K.S., Vanselow, B.A. and Klieve, A.V. (2005) A lack of predatory interaction between rumen ciliate protozoa and Shiga-toxin producing Escherichia coli. Letters in Applied Microbiology, 40 . pp. 117-122.

Cai, X., Chen, H., Blackall, P.J., Yin, Z., Wang, L., Liu, Z. and Jin, M. (2005) Serological characterization of Haemophilus parasuis isolates from China. Veterinary Microbiology, 111 (3-4). pp. 231-236. ISSN 0378-1135

Chen, A.Y., Fry, S.R., Forbes-Faulkner, J., Daggard, G.E. and Mukkur, T.K.S. (2006) Comparative immunogenicity of M. hyopneumoniae NrdF encoded in different expression systems delivered orally via attenuated S. typhimurium aroA in mice. Veterinary Microbiology, 114 (3-4). pp. 252-259.

Chinivasagam, H.N., Redding, M., Runge, G. and Blackall, P.J. (2010) Presence and incidence of food-borne pathogens in Australian chicken litter. British Poultry Science, 51 (3). pp. 311-318.

Chinivasagam, H.N., Estella, W., Cockerill, S. A., Maddock, L., Mayer, D. G., Billington, C., Premaratne, A., Liang, L., Connerton, P. and Connerton, I. (2019) A biocontrol option to control a foodborne pathogen, using bacteriophages to control Campylobacter in poultry. Proceedings, 36 (1). p. 162. ISSN 2504-3900

Chinivasagam, H.N., Estella, W., Maddock, L., Mayer, D.G., Weyand, C., Connerton, P. L. and Connerton, I. F. (2020) Bacteriophages to Control Campylobacter in Commercially Farmed Broiler Chickens, in Australia. Frontiers in Microbiology, 11 (632). ISSN 1664-302X

Chinivasagam, H.N., Pepper, P.M. and Blackall, P.J. (2021) Impact of antibiotics on fluorescent Pseudomonas group and Bacillus cereus group isolated from soils exposed to effluent or waste from conventional and organic pig farming. Journal of Applied Microbiology, 130 . pp. 1130-1141. ISSN 1364-5072

Chinivasagam, H. N., Estella, W., Rodrigues, H., Mayer, D. G., Tran, T., Onysk, A., Weyand, C., Diallo, I. and Billington, C. (2022) Re-used or New Bedding Are Not Drivers of Salmonella Levels and Serovar Emergence in Commercially Farmed Broilers in Australia. Frontiers in Sustainable Food Systems, 6 . ISSN 2571-581X

Corney, B. G., Colley, J., Djordjevic, S. P., Whittington, R. and Graham, G. C. (1993) Rapid identification of some Leptospira isolates from cattle by random amplified polymorphic DNA fingerprinting. Journal of clinical microbiology, 31 (11). pp. 2927-2932. ISSN 0095-11371098-660X

Dayao, D. A. E., Kienzle, M., Gibson, J. S., Blackall, P. J. and Turni, C. (2014) Use of a proposed antimicrobial susceptibility testing method for Haemophilus parasuis. Veterinary Microbiology, 172 (3-4). p. 586. ISSN 03781135

Dayao, D. A., Dawson, S., Kienzle, M. J., Gibson, J. S., Blackall, P. J. and Turni, C. (2015) Variation in the antimicrobial susceptibility of actinobacillus pleuropneumoniae isolates in a pig, within a batch of pigs, and among batches of pigs from one farm. Microbial Drug Resistance, 21 (4). pp. 491-6. ISSN 1076-6294

De Barbieri, I., Gulino, L., Hegarty, R.S., Oddy, V.H., Maguire, A., Li, L., Klieve, A.V. and Ouwerkerk, D. (2015) Production attributes of Merino sheep genetically divergent for wool growth are reflected in differing rumen microbiotas. Livestock Science, 178 . pp. 119-129. ISSN 18711413

Dixon, R. M. and Mayer, R. J. (2020) Estimating the voluntary intake by sheep of tropical grasses from digestibility, regrowth-age and leaf content: a meta-analysis. Animal Production Science, 60 . pp. 1694-1703.

Dixon, R. M., Shotton, P. and Mayer, R. J. (2020) Diets selected and growth of steers grazing buffel grass (Cenchrus ciliaris cv. Gayndah)–Centro (Centrosema brasilianum cv. Oolloo) pastures in a seasonally dry tropical environment. Animal Production Science, 60 (11). pp. 1459-1468.

Do, T., Stephens, C., Townsend, K., Wu, X., Chapman, T., Chin, J., McCormick, B., Bara, M. and Trott, D.J. (2005) Rapid identification of virulence genes in enterotoxigenic Escherichia coli isolates associated with diarrhoea in Queensland piggeries. Australian Veterinary Journal, 83 (5). pp. 293-299. ISSN 0005-0423

Duffield, B.J. and Young, D.A. (1985) Survival of Mycobacterium bovis in defined environmental conditions. Veterinary Microbiology, 10 (2). pp. 193-197. ISSN 0378-1135

Eaves, F.W., Molloy, J.B., Dimmock, C.K. and Eaves, L.E. (1994) A field evaluation of the polymerase chain reaction procedure for the detection of bovine leukaemia virus proviral DNA in cattle. Veterinary Microbiology, 39 (3-4). pp. 313-321. ISSN 0378-1135

Edson, D. W., Field, H., McMichael, L., Mayer, D. G., Martin, J., Welbergen, J., McLaughlin, A., Huth, L., Kristoffersen, J., Tsoukalas, G. and Kirkland, P. (2018) Hematology, plasma biochemistry, and urinalysis of free-ranging grey-headed flying foxes (Pteropus poliocephalus) in Australia. Journal of Zoo and Wildlife Medicine, 49 (3). pp. 591-598. ISSN 1042-7260

Eigeland, K. A., Lanyon, J. M., Trott, D. J., Ouwerkerk, D., Blanshard, W., Milinovich, G. J., Gulino, L. M., Martinez, E., Merson, S. and Klieve, A. V. (2012) Bacterial Community Structure in the Hindgut of Wild and Captive Dugongs (Dugong dugon). Aquatic Mammals, 38 (4). pp. 402-411. ISSN 0167-5427

Gilbert, R. A., Dagar, S. S., Kittelmann, S. and Edwards, J. E. (2021) Editorial: Advances in the Understanding of the Commensal Eukaryota and Viruses of the Herbivore Gut. Frontiers in Microbiology, 12 (392), 619287. ISSN 1664-302X

Gilbert, R. A., Kelly, W. J., Altermann, E., Leahy, S. C., Minchin, C., Ouwerkerk, D. and Klieve, A. V. (2017) Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria. Frontiers in Microbiology, 8 (2340). ISSN 1664-302X

Gilbert, R. A., Netzel, G., Chandra, K., Ouwerkerk, D. and Fletcher, M. T. (2021) Degradation of the Indospicine Toxin from Indigofera spicata by a Mixed Population of Rumen Bacteria. Toxins, 13 (6). ISSN 2072-6651

Gilbert, R. A. and Ouwerkerk, D. (2019) The genetics of rumen phage populations. Proceedings . ISSN 2504-3900

Gilbert, R. A., Townsend, E. M., Crew, K. S., Hitch, T. C. A., Friedersdorff, J. C. A., Creevey, C. J., Pope, P. B., Ouwerkerk, D. and Jameson, E. (2020) Rumen Virus Populations: Technological Advances Enhancing Current Understanding. Frontiers in Microbiology, 11 (450). ISSN 1664-302X

Grant, L. J., Mikkelsen, D., Phan, A. D. T., Kang, S., Ouwerkerk, D., Klieve, A. V., Gidley, M. J. and Williams, B. A. (2020) Purified plant cell walls with adsorbed polyphenols alter porcine faecal bacterial communities during in vitro fermentation. Food & Function, 11 (1). pp. 834-845. ISSN 2042-6496

Gulino, L. M., Ouwerkerk, D., Kang, A. Y. H., Maguire, A. J., Kienzle, M. and Klieve, A. V. (2013) Shedding Light on the Microbial Community of the Macropod Foregut Using 454-Amplicon Pyrosequencing. Plos One, 8 (4). ISSN 1932-6203

Guo, S., Wakeham, D., Brouwers, H. J. M., Cobbold, R. N., Abraham, S., Mollinger, J. L., Johnson, J. R., Chapman, T. A., Gordon, D. M., Barrs, V. R. and Trott, D. J. (2015) Human-associated fluoroquinolone-resistant Escherichia coli clonal lineages, including ST354, isolated from canine feces and extraintestinal infections in Australia. Microbes and Infection, 17 (4). pp. 266-274.

Hasoon, M. F., Jarocki, V. M., Mohammed, M. H., Djordjevic, S. P., Yip, H. Y. E., Carr, M., Khabiri, A., Azari, A. A., Amanollahi, R., Jozani, R. J., Carracher, B., Mollinger, J. L., Deutscher, A. T., Hemmatzadeh, F. and Trott, D. J. (2023) Antimicrobial susceptibility and molecular characteristics of Mycoplasma bovis isolated from cases of bovine respiratory disease in Australian feedlot cattle. Veterinary Microbiology, 283 . p. 109779. ISSN 0378-1135

Henderson, G., Cox, F., Ganesh, S., Jonker, A., Young, W., Janssen, P.H. and Ouwerkerk, D. (2015) Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range. Scientific Reports, 5 . p. 14567.

Hitch, T. C.A., Edwards, J. E. and Gilbert, R. A. (2019) Metatranscriptomics reveals mycoviral populations in the ovine rumen. FEMS Microbiology Letters, 366 (13). ISSN 0378-1097

Hornitzky, M. A., Vanselow, B. A., Walker, K., Bettelheim, K. A., Corney, B., Gill, P., Bailey, G. and Djordjevic, S. P. (2002) Virulence properties and serotypes of Shiga toxin-producing Escherichia coli from healthy Australian cattle. Applied and environmental microbiology, 68 (12). pp. 6439-6445. ISSN 0099-22401098-5336

Joachimsthal, E.L., Reeves, R.K.H., Hung, J., Nielsen, L. K., Ouwerkerk, D., Klieve, A. V. and Vickers, C.E. (2010) Production of bacteriocins by Streptococcus bovis strains from Australian ruminants. Journal of Applied Microbiology, 108 (2). pp. 428-436. ISSN 13645072 (ISSN)

Kawasaki, M., Delamare-Deboutteville, J., Bowater, R. O., Walker, M. J., Beatson, S., Ben Zakour, N. L. and Barnes, A. C. (2018) Microevolution of Streptococcus agalactiae ST-261 from Australia indicates dissemination via imported tilapia and ongoing adaptation to marine hosts or environment. Applied and Environmental Microbiology, 84 (16), e00859-18. ISSN 00992240 (ISSN)

Kayal, A., Nahar, N., Barker, L., Tran, T., Williams, M., Blackall, P. J., Turni, C. and Omaleki, L. (2024) Molecular identification and characterisation of Mannheimia haemolytica. Veterinary Microbiology, 288 . p. 109930. ISSN 0378-1135

Keerqin, C., McGlashan, K., Van, T. T. H., Chinivasagam, H.N., Moore, R. J., Choct, M. and Wu, S.-B. (2022) A lytic bacteriophage isolate reduced Clostridium perfringens induced lesions in necrotic enteritis challenged broilers. Frontiers in Veterinary Science, 9 . ISSN 2297-1769

Kidsley, A. K., White, R. T., Beatson, S. A., Saputra, S., Schembri, M. A., Gordon, D., Johnson, J. R., O’Dea, M., Mollinger, J. L., Abraham, S. and Trott, D. J. (2020) Companion Animals Are Spillover Hosts of the Multidrug-Resistant Human Extraintestinal Escherichia coli Pandemic Clones ST131 and ST1193. Frontiers in Microbiology, 11 (1968). ISSN 1664-302X

Klieve, A. V., Ouwerkerk, D. and Maguire, A. J. (2012) Archaea in the foregut of macropod marsupials: PCR and amplicon sequence-based observations. Journal of Applied Microbiology, 113 (5). pp. 1065-1075. ISSN 1364-5072

Klieve, A. V., Ouwerkerk, D., Turner, A. and Roberton, R. (2002) The production and storage of a fermentor-grown bacterial culture containing Synergistes jonesii, for protecting cattle against mimosine and 3-hydroxy-4(1H)-pyridone toxicity from feeding on Leucaena leucocephala. Australian Journal of Agricultural Research, 53 (1). pp. 1-5.

Klieve, A.V., Hennessy, D., Ouwerkerk, D., Forster, R.J., Mackie, R.I. and Attwood, G.T. (2003) Establishing populations of Megasphaera elsdenii YE 34 and Butyrivibrio fibrisolvens YE 44 in the rumen of cattle fed high grain diets. Journal of Applied Microbiology, 95 (3). pp. 621-630.

Klieve, A. V., Swain, R. A. and Nolan, J. V. (1996) Bacteriophages in the rumen: types present, population size and implications for the efficiency of feed utilisation. Proceedings of the Australian Society of Animal Production, 21 . pp. 92-94.

Koya, A., de Wet, S. C., Turner, S., Cawdell-Smith, J., Venus, B., Greer, R. M., Lew-Tabor, A. E. and Boe-Hansen, G. B. (2015) Evaluation and histological examination of a Campylobacter fetus subsp. venerealis small animal infection model. Research in Veterinary Science, 99 . pp. 1-9.

Kurscheid, S., Lew-Tabor, A. E., Rodriguez Valle, M., Bruyeres, A. G., Doogan, V. J., Munderloh, U. G., Guerrero, F. D., Barrero, R. A. and Bellgard, M. I. (2009) Evidence of a tick RNAi pathway by comparative genomics and reverse genetics screen of targets with known loss-of-function phenotypes in Drosophila. BMC Molecular Biology, 10 , 26. ISSN 1471-2199

Lancashire, J. F., Terry, T. D., Blackall, P. J. and Jennings, M. P. (2005) Plasmid-encoded Tet B tetracycline resistance in Haemophilus parasuis. Antimicrobial agents and chemotherapy, 49 (5). pp. 1927-1931. ISSN 0066-48041098-6596

Langhorne, C., Gupta, S. D., Horsman, S., Wood, C., Wood, B. J., Barker, L., Deutscher, A., Price, R., McGowan, M. R., Humphris, M., Ranjbar, S., Henning, J. and Gibson, J. S. (2023) Bacterial culture and antimicrobial susceptibility results from bovine milk samples submitted to four veterinary diagnostic laboratories in Australia from 2015 to 2019. Frontiers in Veterinary Science, 10 . ISSN 2297-1769

Leemon, D. M. and Jonsson, N.N. (2012) Comparative studies on the invasion of cattle ticks (Rhipicephalus (Boophilus) microplus) and sheep blowflies (Lucilia cuprina) by Metarhizium anisopliae (Sorokin). Journal of Invertebrate Pathology, 109 (2). pp. 248-259.

Lew, A.E., Bock, R.E., Minchin, C. M. and Masaka, S. (2002) A msp1α polymerase chain reaction assay for specific detection and differentiation of Anaplasma marginale isolates. Veterinary Microbiology, 86 (4). pp. 325-335. ISSN 0378-1135

Lew, A.E., Bock, R.E., Minchin, C. M. and Masaka, S. (2002) Erratum to "A msp1 alpha polymerase chain reaction assay for specific detection and differentiation of Anaplasma marginale isolates" [Vet Microbiol. 86 (2002) 325-335]. Veterinary Microbiology, 87 (4). pp. 365-366. ISSN 0378-1135

Lew, A.E., Dluzewski, A.R., Johnson, A.M. and Pinder, J.C. (2002) Myosins of Babesia bovis: molecular characterisation, erythrocyte invasion, and phylogeny. Cell Motility and the Cytoskeleton, 52 (4). pp. 202-220. ISSN 1949-3592

Loh, Z. H., Ouwerkerk, D., Klieve, A. V., Hungerford, N. L. and Fletcher, M. T. (2020) Toxin Degradation by Rumen Microorganisms: A Review. Toxins, 12 (10). ISSN 2072-6651

Loh, Z. H., Hungerford, N. L., Ouwerkerk, D., Klieve, A. V. and Fletcher, M. T. (2023) Identification of Acid Hydrolysis Metabolites of the Pimelea Toxin Simplexin for Targeted UPLC-MS/MS Analysis. Toxins, 15 (9). p. 551. ISSN 2072-6651

Mackie, R.I., Aminov, R.I., Hu, W., Olsen, M., Klieve, A. V. and Kamagata, Y. (2002) Molecular Ecology of Oscillospira guillermondii - a large, morphologically conspicuous, but uncultured rumen bacterium. Reproduction Nutrition Development, 42 (S1). S7-S8. ISSN 0926-5287

Mahony, T. J., McCarthy, F. M., Gravel, J. L., Corney, B., Young, P. L. and Vilcek, S. (2005) Genetic analysis of bovine viral diarrhoea viruses from Australia. Veterinary Microbiology, 106 (1-2). pp. 1-6. ISSN 0378-1135

Mason, M. G., Blackall, P. J., Botella, J. R. and Templeton, J. M. (2020) An easy-to-perform, culture-free Campylobacter point-of-management assay for processing plant applications. Journal of Applied Microbiology, 128 (3). pp. 620-629. ISSN 1364-5072

McCarthy, F.M., Smith, G.A. and Mattick, J.S. (1999) Molecular characterisation of Australian bovine enteroviruses. Veterinary Microbiology, 68 (1-2). pp. 71-81. ISSN 0378-1135

Milinovich, G. J., Burrell, P. C., Pollitt, C. C., Bouvet, A. and Trott, D. J. (2008) Streptococcus henryi sp. nov. and Streptococcus caballi sp. nov., isolated from the hindgut of horses with oligofructuose-induced laminitis. International Journal of Systematic and Evolutionary Microbiology, 58 (1). pp. 262-266. ISSN 1466-5034

Milinovich, G. J., Klieve, A. V., Pollitt, C. C. and Trott, D. J. (2010) Microbial Events in the Hindgut During Carbohydrate-induced Equine Laminitis. Veterinary Clinics of North America-Equine Practice, 26 (1). 79-+. ISSN 0749-0739

Moolhuijzen, P. M., Lew-Tabor, A. E., Wlodek, B. M., Agüero, F. G., Comerci, D. J., Ugalde, R. A., Sanchez, D. O., Appels, R. and Bellgard, M. (2009) Genomic analysis of Campylobacter fetus subspecies: Identification of candidate virulence determinants and diagnostic assay targets. BMC Microbiology, 9 , 86. ISSN 1471-2180

Morales-Erasto, V., Maruri-Esteban, E., Trujillo-Ruíz, H. H., Talavera-Rojas, M., Blackall, P. J. and Soriano-Vargas, E. (2015) Protection Conferred by Infectious Coryza Vaccines Against Emergent Avibacterium paragallinarum Serovar C-1. Avian Diseases, 59 (1). pp. 162-164. ISSN 0005-2086

Morgan, J.A.T., Morris, G.M., Wlodek, B.M., Byrnes, R., Jenner, M., Constantinoiu, C.C., Anderson, G.R., Lew-Tabor, A. E., Molloy, J.B., Gasser, R.B. and Jorgensen, W.K. (2009) Real-time polymerase chain reaction (PCR) assays for the specific detection and quantification of seven Eimeria species that cause coccidiosis in chickens. Molecular and Cellular Probes, 23 (2). pp. 83-89. ISSN 0890-8508

Mukhopadhya, I., Morais, S., Laverde-Gomez, J., Sheridan, P. O., Walker, A. W., Kelly, W., Klieve, A. V., Ouwerkerk, D., Duncan, S. H., Louis, P., Koropatkin, N., Cockburn, D., Kibler, R., Cooper, P. J., Sandoval, C., Crost, E., Juge, N., Bayer, E. A. and Flint, H. J. (2018) Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii. Environmental microbiology, 20 (1). pp. 324-336. ISSN 1462-2912

Naseem, M. N., Omaleki, L., Templeton, J. M., Muralidhar, M., Botella, J. R., Blackall, P. J. and Turni, C. (2023) Use of piggery effluent for point-of-management diagnostics: A proof of concept. Animal - science proceedings, 14 (7). pp. 820-821. ISSN 2772-283X

Naseem, M. N., Turni, C., Gilbert, R. A., Raza, A., Allavena, R., McGowan, M., Constantinoiu, C., Ong, C. T., Tabor, A. E. and James, P. (2022) The role of Staphylococcus agnetis and Staphylococcus hyicus in the pathogenesis of buffalo fly skin lesions in cattle. bioRxiv, 10 (4).

Navarro, M., Stanley, R., Cusack, A. and Sultanbawa, Y. (2015) Combinations of plant-derived compounds against Campylobacter in vitro. The Journal of Applied Poultry Research, 24 (3). pp. 352-363.

Nelson, L. J., Seeman, O. D. and Shinwari, M. W. (2017) Psorergatoides cf. kerivoulae (Acari: Psorergatidae) induces cutaneous lesions on the wings of Myotis macropus (Chiroptera: Vespertilionidae). Systematic and Applied Acarology, 22 (3). pp. 446-448. ISSN 1362-1971

Netzel, G., Tan, E. T. T., Yin, M., Giles, C., Yong, K. W. L., Al Jassim, R. and Fletcher, M. T. (2019) Bioaccumulation and Distribution of Indospicine and Its Foregut Metabolites in Camels Fed Indigofera spicata. Toxins (Basel), 11 (3). ISSN 2072-6651

O'Hara, P. J., Klieve, A. V., Murray, P. J., Maguire, A. J., Ouwerkerk, D. and Harper, K. (2016) Effect of time and diet change on the bacterial community structure throughout the gastrointestinal tract and in faeces of the northern brown bandicoot, Isoodon macrourus. Australian Journal of Zoology, 64 (1). p. 48. ISSN 0004-959X

Oakey, H.J. (2007) A universal test to determine the integrity of RNA, and its suitability for reverse transcription, in animal tissue laboratory specimens. Journal of Veterinary Diagnostic Investigation, 19 (5). pp. 459-464.

Ooi, M. C., Goulden, E. F., Trotter, A. J., Smith, G. G. and Bridle, A. R. (2020) Aquimarina sp. Associated With a Cuticular Disease of Cultured Larval Palinurid and Scyllarid Lobsters. Frontiers in Microbiology, 11 (2395). ISSN 1664-302X

Ouwerkerk, D., Klieve, A. V., Forster, R.J., Templeton, J. M. and Maguire, A. J. (2005) Characterization of culturable anaerobic bacteria from the forestomach of an eastern grey kangaroo, Macropus giganteus. Letters in Applied Microbiology, 41 (4). pp. 327-333. ISSN 1472-765X

Ouwerkerk, D., Maguire, A. J., Gravel, J. L., Minchin, C. M., Gravel, M., Klieve, A. and Gilbert, R. A. (2019) Effect of Feeding Different Cultivars of Leucaena leucocephala on Rumen-Based in vitro Anaerobic Fermentations. Proceedings, 36 (1). p. 96. ISSN 2504-3900

Platell, J.L., Johnson, J.R., Cobbold, R.N. and Trott, D.J. (2012) Multidrug-resistant extraintestinal pathogenic Escherichia coli of sequence type ST131 in animals and foods. Veterinary Microbiology, 153 (1-2). pp. 99-108.

Rice, S. J., Baker, D. K. and Leemon, D. M. (2019) Development of mycoinsecticide formulations with Beauveria bassiana and Metarhizium anisopliae for the control of lesser mealworm, Alphitobius diaperinus, in chicken broiler houses. BioControl, 64 (5). pp. 489-500. ISSN 1573-8248

Roy Chowdhury, P., Alhamami, T., Venter, H., Veltman, T., Carr, M., Mollinger, J. L., Trott, D. J., Djordjevic, S. P. and Putonti, C. (2022) Complete Genome Sequence of Pasteurella multocida Sequence Type 394, Isolated from a Case of Bovine Respiratory Disease in Australia. Microbiology Resource Announcements, 11 (3). ISSN 2576-098X

Roy Chowdhury, P., Alhamami, T., Venter, H., Veltman, T., Carr, M., Mollinger, J. L., Trott, D. J. and Djordjevic, S. P. (2024) Identification and evolution of ICE-PmuST394: a novel integrative conjugative element in Pasteurella multocida ST394. Journal of Antimicrobial Chemotherapy . ISSN 0305-7453

Schofield, B. J., Lachner, N., Le, O. T., McNeill, D. M., Dart, P., Ouwerkerk, D., Hugenholtz, P. and Klieve, A. V. (2018) Beneficial changes in rumen bacterial community profile in sheep and dairy calves as a result of feeding the probiotic Bacillus amyloliquefaciens H57. Journal of Applied Microbiology, 124 (3). pp. 855-866. ISSN 1365-2672

Schofield, B. J., Skarshewski, A., Lachner, N., Ouwerkerk, D., Klieve, A. V., Dart, P. and Hugenholtz, P. (2016) Near complete genome sequence of the animal feed probiotic, Bacillus amyloliquefaciens H57. Standards in Genomic Sciences, 11 (1). pp. 1-7. ISSN 1944-3277

Seshadri, R., Leahy, S. C., Attwood, G. T., Teh, K. H., Lambie, S. C., Cookson, A. L., Eloe-Fadrosh, E. A., Pavlopoulos, G. A., Hadjithomas, M., Varghese, N. J., Paez-Espino, D., Hungate project, c., Perry, R., Henderson, G., Creevey, C. J., Terrapon, N., Lapebie, P., Drula, E., Lombard, V., Rubin, E., Kyrpides, N. C., Henrissat, B., Woyke, T., Ivanova, N. N. and Kelly, W. J. (2018) Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nature Biotechnology, 36 (4). pp. 359-367.

Smith, C., de Jong, C. and Field, H. (2010) Sampling small quantities of blood from microbats. Acta Chiropterologica, 12 (1). pp. 255-258. ISSN 1508-1109

Stephens, C. P. and Hampson, D. J. (2002) Experimental infection of broiler breeder hens with the intestinal spirochaete Brachyspira ( Serpulina ) pilosicoli causes reduced egg production. Avian Pathology, 31 (2). pp. 169-175. ISSN 0307-9457

Stephens, C. P., Oxberry, S. L., Phillips, N. D., La, T. and Hampson, D. J. (2005) The use of multilocus enzyme electrophoresis to characterise intestinal spirochaetes (Brachyspira spp.) colonising hens in commercial flocks. Veterinary Microbiology, 107 (1-2). pp. 149-157. ISSN 0378-1135

Sun, X., Kung, N. Y. H., Gao, L., Liu, Y., Zhan, S., Qi, X., Wang, X., Dong, X., Jia, Z. and Morris, R. (2018) Social network analysis for poultry HPAI transmission. Transboundary and Emerging Diseases, 65 (6). pp. 1909-1919. ISSN 18651674 (ISSN)

Swain, R. A., Klieve, A. V. and Nolan, J. V. (1996) Factors affecting the rumen bacteriophage population. Proceedings of the Australian Society of Animal Production, 21 . p. 409.

Templeton, J. M., Botella, J.R. and Blackall, P. J. (2022) Are point of management assays relevant for food safety in the poultry industries? Microbiology Australia . ISSN 2201-9189

Torok, V. A., Hughes, R. J., Mikkelsen, L. L., Perez-Maldonado, R., Balding, K., MacAlpine, R., Percy, N. J. and Ophel-Keller, K. (2011) Identification and Characterization of Potential Performance-Related Gut Microbiotas in Broiler Chickens across Various Feeding Trials. Applied and Environmental Microbiology, 77 (17). pp. 5868-5878.

Townsend, K. M., Giang, V. N., Stephens, C., Scott, P. T. and Trott, D. J. (2005) Application of nox-restriction fragment length polymorphism for the differentiation of Brachyspira intestinal spirochetes isolated from pigs and poultry in Australia. Journal of Veterinary Diagnostic Investigation, 17 (2). pp. 103-109. ISSN 1040-6387

Turni, C., Pyke, M. and Blackall, P.J. (2010) Validation of a real-time PCR forHaemophilus parasuis. Journal of Applied Microbiology, 108 (4). pp. 1323-1331. ISSN 13645072

Turni, C., Singh, R., Schembri, M.A. and Blackall, P.J. (2014) Evaluation of a multiplex PCR to identify and serotypeActinobacillus pleuropneumoniaeserovars 1, 5, 7, 12 and 15. Letters in Applied Microbiology, 59 (4). pp. 362-369. ISSN 02668254

Turni, C., Meers, J., Parke, K., Singh, R., Yee, S., Templeton, J. M., Mone, N.K., Blackall, P. J. and Barnes, T.S. (2021) Pathogens associated with pleuritic pig lungs at an abattoir in Queensland Australia. Australian Veterinary Journal, 99 (5). pp. 163-171. ISSN 0005-0423

Xu, F., Chen, X., Shi, A., Yang, B., Wang, J., Li, Y., Guo, X., Blackall, P.J. and Yang, H. (2006) Characterization and immunogenicity of an apxIA mutant of Actinobacillus pleuropneumoniae. Veterinary Microbiology, 118 (3-4). pp. 230-239. ISSN 0378-1135

Yee, S., Blackall, P. J. and Turni, C. (2018) Genetic diversity and toxin gene distribution among serovars of Actinobacillus pleuropneumoniae from Australian pigs. Australian Veterinary Journal, 96 (1-2). pp. 17-23. ISSN 0005-0423

Yuan, Y., Gauthier, E., Hungerford, N. L., Ouwerkerk, D., Fletcher, M. T. and Laycock, B. (2019) Modelling the Controlled Release of Toxins in a Rumen Environment. Proceedings, 36 (1). p. 89. ISSN 2504-3900

Book Section

Attwood, G. T. and Klieve, A. V. (2000) Molecular techniques for monitoring bacterial and bacteriophage populations in the rumen. In: Microbial Biosystems: New Frontiers. Proceedings of the 8th International Symposium on Microbial Ecology (1998). Atlantic Canadian Society for Microbial Ecology, Canada. ISBN 9780968676332

Forster, R.J., Klieve, A. V. and Ouwerkerk, D. (2001) Advances in evaluating and altering the rumen microbial ecosystem. In: Recent advances in animal nutrition in Australia 2001, 16th Symposium, Armidale, Australia. Animal Science, University of New England, Australia. ISBN 1-8638-9743-7

Gilbert, R. A. and Klieve, A. V. (2015) Ruminal Viruses (Bacteriophages, Archaeaphages). In: Rumen Microbiology: From Evolution to Revolution. Springer.

Gilbert, R. A. and Ouwerkerk, D. (2020) Ruminal viruses and extrachromosomal genetic elements. In: Ruminal viruses and extrachromosomal genetic elements. Burleigh Dodds Series in Agricultural Science (83). Burleigh Dodds. ISBN 9781786763327

Gilbert, R. A., Ouwerkerk, D. and Klieve, A. V. (2015) Phage therapy in livestock methane amelioration. In: Livestock production and climate change. Cabi. ISBN 9781780644325

Klieve, A. V. and Gilbert, R. A. (2005) Bacteriophage populations. In: Methods in Gut Microbial Ecology for Ruminants. Springer.

Mackie, R.I., McSweeney, C.S. and Klieve, A. V. (2002) Microbial ecology of the ovine rumen. In: Sheep Nutrition. CSIRO, 385 pages. ISBN 978-0-85199-595-3

Mahony, T. J., McCarthy, F. M., Gravel, J. L. and Young, P. L. (2005) Construction of a Gene Inactivation Library for Bovine herpesvirus 1 Using Infectious Clone Technology. In: DNA viruses: methods and protocols. Methods in Molecular Biology (292). Humana Press. ISBN 978-1-58829-353-4

Premaratne, A., Zhang, H., Wang, R., Chinivasagam, N. H. and Billington, C. (2021) Phage Biotechnology to Mitigate Antimicrobial Resistance in Agriculture. In: Sustainable Agriculture Reviews 49: Mitigation of Antimicrobial Resistance Vol 2. Natural and Synthetic Approaches. Springer International Publishing, Cham. ISBN 978-3-030-58259-3

Monograph

Chinivasagam, H.N., Estella, W., Cockerill, S. A., Maddock, L., Mayer, D. G., Billington, C., Premaratne, A., Liang, L., Connerton, P. L. and Connerton, I. F. (2020) Moving from concept to control; use of phages for Campylobacter reduction. Project Report. AgriFutures.

Chinivasagam, H.N. and Runge, G. (2008) Food-borne pathogens and animal botulism issues surrounding the on-farm composting of layer chicken waste and mortalities – a review. Technical Report. State of Queensland.

Ouwerkerk, D., Gilbert, R. A. and Klieve, A. (2011) Archaeaphage therapy to control rumen methanogens. Project Report. Meat & Livestock Australia Limited.

Turner, S. (2019) Veterinary laboratory user's guide. Manual. State of Queensland.

Conference or Workshop Item

Bauer, M., Ison, K. A.D. and Barber, D. G. (2022) Strategies for profitable beef production with Holstein steers. In: Australian Association of Animal Sciences 34th Biennial Conference 2022, 5–7 July 2022, Cairns, Queensland.

Bettelheim, K. A., Kuzevski, A., Gilbert, R. A., Krause, D.O. and McSweeney, C. S. (2003) The diversity of Escherichia coli serotypes and biotypes in cattle faeces and the effects of diet-induced changes. In: Microbiology: Art in Science, Joint Meeting of the Australian and New Zealand Societies for Microbiology, 28 September - 2 October 2003, Auckland, New Zealand.

Bisgaard, M., Blackall, P. and Christensen, H. (2011) Pasteurellaceae from kangaroos form a diverse but separate phylogenetic line. In: International Pasteurellaceae Conference 2011, Elsinore, Denmark.

Blackall, P.J. (2012) Veterinary Microbiology - Brave New Worlds and Forgotten Frontiers. In: Annual Scientific Meeting of the Australian Society for Microbiology, Brisbane / Brisbane Convention Centre.

Blackall, L.L., Blackall, P. J., Browning, J., Burn, T., Crocetti, G. and Miflin, J. (1999) Unusual bacteria apparently association with respiratory disease in ostriches and a turkey. In: Forty-eighth Western Poultry Disease Conference, 24-27 April 1999, Vancouver, Canada.

Gavey, L. (2019) Producer motivations for and against engagement in surveillance. In: 2019 Australian Biosecurity Symposium, 12-13 June 2019, Gold Coast, Australia.

Gilbert, R. A., Klieve, A. V. and Nolan, J. V. (2000) Survival of phage particles in the rumen ecosystem. In: Australian Society for Microbiology Annual Scientific Meeting, 8-13 July 2000, Cairns, Queensland.

Gilbert, R. A., Ouwerkerk, D., Negara, W., Schatz, T., Klieve, A. and McCosker, K. D. (2019) Shifting cattle from grazing extensive pastures to floodplain pastures in the Northern Territory: Effect on rumen microbial communities. In: Proceedings of the Northern Beef Research Update Conference, 19-22 August 2019, Brisbane, Queensland, Australia.

Harper, K., Costa, D., Gulino, L.-M., Klieve, A., McLennan, S., Quigley, S. and Poppi, D. (2013) The association between liveweight gain and rumen microbial diversity in cattle. In: Northern Beef Research Update Conference 2013, Cairns, Australia.

Harriott, L., Wood, C., Gentle, M., Traub, R., Perkins, N., Tozer, S. and Cobbold, R. (2019) Occurrence of bacterial pathogens and antimicrobial resistance in peri-urban wild dogs. In: 1st Queensland Pest Animal and Weed Symposium, 20-23 May 2019, Gold Coast, Australia.

Klieve, A. V., Swain, R. A. and Nolan, J. V. (1993) Natural variability and diurnal fluctuation of bacteriophage populations in the rumen. In: 22nd Biennial Conference on Rumen Function, November 9-11, 1993, Chicago, USA.

Lemin, C., English, B. H. and Rolfe, J. W. (2022) Liveweight performance of cattle grazing Redlands and Wondergraze leucaena north Queensland. In: Australian Association of Animal Sciences 34th Biennial Conference 2022, 5–7 July 2022, Cairns, Queensland.

Loh, Z.H., Hungerford, N.L., Ouwerkerk, D., Klieve, A.V. and Fletcher, M.T. (2019) Mitigating the Effects of the Toxin Simplexin in Pimelea Poisoning of Cattle by Development of a Microbial Probiotic. In: 4th Queensland Annual Chemistry Symposium QACS 2019, 29th November 2019, University of Queensland, Brisbane.

Ouwerkerk, D., Gauthier, E., Yuan, Y., Costa, D. F. A., Laycock, B. and Fletcher, M. T. (2022) In vivo rumen microbial degradation of polyhydroxyalkanoate biopolymers. In: Australian Association of Animal Sciences 34th Biennial Conference 2022, 5–7 July 2022, Cairns, Queensland.

Ouwerkerk, D., Gilbert, R. A., Gravel, J. L., Maguire, A. J., Minchin, C. M., Hungerford, N. L., Loh, Z. H. and Fletcher, M. T. (2021) Enriching for rumen bacteria to degrade the Pimelea plant toxin simplexin, in an anaerobic in vitro fermenter. In: 33rd Australian Association of Animal Sciences Conference, 1-3 February 2021, Fremantle, Western Australia.

Ouwerkerk, D., Gravel, J. L., Maguire, A. J., Minchin, C. M., Klieve, A.V. and Gilbert, R. A. (2021) Changes in mixed microbial inoculums to prevent the toxic side-effects in cattle grazing new varieties of Leucaena. In: 33rd Australian Association of Animal Sciences Conference, 1-3 February 2021, Fremantle, Western Australia.

Sullivan, M. T., Hopkins, K., Buck, S. R., Mayne, B. and Christensen, B. (2022) Steer liveweight gain on Redlands Leucaena leucocephala (leucaena)-Urochloa decumbens (signal grass) pastures in coastal central Queensland. In: Australian Association of Animal Sciences 34th Biennial Conference 2022, 5–7 July 2022, Cairns, Queensland.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1996) Effect of tannic acid on the bacteriophage populations within sheep rumen. In: Microbiology Australia, International meeting and exhibition of the Australian and New Zealand societies for microbiology, Christchurch, New Zealand.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1995) Tannic acid reduces bacteriophage numbers in rumen bacterial cultures. In: Bryant 70th Symposium, Illinois, USA.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1995) Tannic acid reduces bacteriophage numbers in rumen bacterial cultures. In: Australian Society for Microbiology Annual Scientific Meeting, 24-29 September 1995, Canberra, ACT, Australia..

Tan, E.T.T., Fletcher, M. T., D'arcy, B.R. and Al Jassim, R. (2015) In vitro degradation of hepatotoxic indospicine in indigofera spicata by camel foregut fluid. In: 4th international conference of ISOCARD, 2015, Almaty Kazakhstan.

Yuan, Y., Gauthier, E., Hungerford, N.L., Ouwerkerk, D., Fletcher, M.T. and Laycock, B. (2019) Modelling the controlled release of toxins in a rumen environment. In: 4th Queensland Annual Chemistry Symposium QACS 2019, 29th November 2019, University of Queensland, Brisbane.

Book

Edwards, J. E., Dagar, S. S., Kittelmann, S. and Gilbert, R. A., eds. (2021) Advances in the Understanding of the Commensal Eukaryota and Viruses of the Herbivore Gut. Frontiers in Microbiology . Frontiers Journal Series, 140 pages. ISBN 978-2-88966-674-4

Weeks, E. N.I., Machtinger, E. T., Leemon, D. and Geden, C. J. (2018) Biological control of livestock pests: Entomopathogens. Wageningen Academic Publishers.

This list was generated on Tue Mar 19 01:19:08 2024 UTC.