Items where Subject is "Microorganisms in the animal body"

Article

Agnihotri, K., Oakey, J., Smith, C. S., Weir, R., Pyke, A. and Melville, L. (2021) Genome-scale molecular and phylogenetic characterization of Middle Point orbiviruses from Australia. Journal of General Virology, 102 (12). ISSN 1465-2099

Al-Ajmi, D., Padmanabha, J., Denman, S.E., Gilbert, R. A., Al Jassim, R.A.M. and McSweeney, C.S. (2006) Evaluation of a PCR detection method for Escherichia coli O157:H7/H– bovine faecal samples. Letters in Applied Microbiology, 42 (4). pp. 386-391. ISSN 0266-8254

Attwood, G. T., Klieve, A. V., Ouwerkerk, D. and Patel, B. K. (1998) Ammonia-hyperproducing bacteria from New Zealand ruminants. Applied and environmental microbiology, 64 (5). pp. 1796-1804. ISSN 0099-22401098-5336

Bajagai, Y. S., Yeoh, Y. K., Li, X., Zhang, D., Dennis, P. G., Ouwerkerk, D., Dart, P. J., Klieve, A. V. and Bryden, W. L. (2023) Enhanced meat chicken productivity in response to the probiotic Bacillus amyloliquefaciens H57 is associated with the enrichment of microbial amino acid and vitamin biosynthesis pathways. Journal of Applied Microbiology, 134 (5). ISSN 1364-5072

Barrett, J. L., Carlisle, M.S. and Prociv, P. (2002) Neuro-angiostrongylosis in wild Black and Grey-headed flying foxes (Pteropus spp). Australian Veterinary Journal, 80 (9). pp. 554-558.

Bettelheim, K.A., Kuzevski, A., Gilbert, R. A., Krause, D.O. and McSweeney, C.S. (2005) The diversity of Escherichia coli serotypes and biotypes in cattle faeces. Journal of Applied Microbiology, 98 (3). pp. 699-709. ISSN 1364-5072

Blackall, P.J., O'Dell, R. and Stephens, C.P. (1993) In vitro antibacterial properties of tilmicosin against isolates of Histophilus somni from Australian cattle. Australian Veterinary Journal, 70 (10). pp. 391-392.

Browne, D. J., Miller, C. M., O'Hara, E. P., Courtney, R., Seymour, J., Doolan, D. L. and Orr, R. (2024) Optimization and application of bacterial environmental DNA and RNA isolation for qualitative and quantitative studies. Environmental DNA, 6 (4). e589.

Burow, L.C., Gobius, K.S., Vanselow, B.A. and Klieve, A.V. (2005) A lack of predatory interaction between rumen ciliate protozoa and Shiga-toxin producing Escherichia coli. Letters in Applied Microbiology, 40 . pp. 117-122.

Chinivasagam, H.N., Bremner, H.A. and Reeves, R.K.H. (1998) Can spoilage bacteria cause blackspot (melanosis) in stored prawns? Letters in Applied Microbiology, 27 (1). pp. 5-8. ISSN 0266-8254

Dixon, R. M. and Mayer, R. J. (2022) Availability to ruminants of nitrogen in senesced C4 tropical grasses. Animal Production Science, 63 (3). pp. 269-278.

Easton, D. M., Totsika, M., Allsopp, L. P., Phan, M. D., Idris, A., Wurpel, D. J., Sherlock, O., Zhang, B., Venturini, C., Beatson, S. A., Mahony, T. J., Cobbold, R. N. and Schembri, M. A. (2011) Characterization of EhaJ, a New Autotransporter Protein from Enterohemorrhagic and Enteropathogenic Escherichia coli. Frontiers in Microbiology, 2 . p. 120. ISSN 1664-302X (Electronic)1664-302X (Linking)

Gilbert, R. A., Davis, C., Gravel, J. L. and Ouwerkerk, D. (2024) Genome sequence and annotation of Pyramidobacter sp. strain YE332, isolated from a cattle rumen fermentation of Leucaena leaf. Microbiology Resource Announcements, 13 (4), e0101223.

Gilbert, R. A., Denman, S. E., Padmanabha, J., Fegan, N., Al Ajmi, D. and McSweeney, C. S. (2008) Effect of diet on the concentration of complex Shiga toxin-producing Escherichia coli and EHEC virulence genes in bovine faeces, hide and carcass. International Journal of Food Microbiology, 121 (2). pp. 208-216. ISSN 0168-1605

Gilbert, R. A., Ouwerkerk, D. and Klieve, A. V. (2015) Modulation of the rumen microbiome. Microbiology Australia, 36 (1). p. 18. ISSN 1324-4272

Gilbert, R. A., Tomkins, N., Padmanabha, J., Gough, J.M., Krause, D.O. and McSweeney, C.S. (2005) Effect of finishing diets on Escherichia coli populations and prevalence of enterohaemorrhagic E. coli virulence genes in cattle faeces. Journal of Applied Microbiology, 99 (4). pp. 885-894. ISSN 1364-5072

Grant, L. J., Mikkelsen, D., Phan, A. D. T., Kang, S., Ouwerkerk, D., Klieve, A. V., Gidley, M. J. and Williams, B. A. (2020) Purified plant cell walls with adsorbed polyphenols alter porcine faecal bacterial communities during in vitro fermentation. Food & Function, 11 (1). pp. 834-845. ISSN 2042-6496

Gulino, L. M., Ouwerkerk, D., Kang, A. Y. H., Maguire, A. J., Kienzle, M. and Klieve, A. V. (2013) Shedding Light on the Microbial Community of the Macropod Foregut Using 454-Amplicon Pyrosequencing. Plos One, 8 (4). ISSN 1932-6203

Guo, S., Wakeham, D., Brouwers, H. J. M., Cobbold, R. N., Abraham, S., Mollinger, J. L., Johnson, J. R., Chapman, T. A., Gordon, D. M., Barrs, V. R. and Trott, D. J. (2015) Human-associated fluoroquinolone-resistant Escherichia coli clonal lineages, including ST354, isolated from canine feces and extraintestinal infections in Australia. Microbes and Infection, 17 (4). pp. 266-274.

Horyanto, D., Bajagai, Y. S., von Hellens, J., Chen, X., Thi Thu Hao, T. T. H., Dunlop, M. W. and Stanley, D. (2024) The Association between Broiler Litter Microbiota and the Supplementation of Bacillus Probiotics in a Leaky Gut Model. Animals, 14 (12). ISSN 2076-2615

Joachimsthal, E.L., Reeves, R.K.H., Hung, J., Nielsen, L. K., Ouwerkerk, D., Klieve, A. V. and Vickers, C.E. (2010) Production of bacteriocins by Streptococcus bovis strains from Australian ruminants. Journal of Applied Microbiology, 108 (2). pp. 428-436. ISSN 13645072 (ISSN)

Kidsley, A. K., White, R. T., Beatson, S. A., Saputra, S., Schembri, M. A., Gordon, D., Johnson, J. R., O’Dea, M., Mollinger, J. L., Abraham, S. and Trott, D. J. (2020) Companion Animals Are Spillover Hosts of the Multidrug-Resistant Human Extraintestinal Escherichia coli Pandemic Clones ST131 and ST1193. Frontiers in Microbiology, 11 (1968). ISSN 1664-302X

Klieve, A. V. and Swain, R. A. (1993) Estimation of ruminal bacteriophage numbers by pulsed-field gel electrophoresis and laser densitometry. Applied and Environmental Microbiology, 59 (7). pp. 2299-2303.

Klieve, A. V., Swain, R. A. and Nolan, J. V. (1996) Bacteriophages in the rumen: types present, population size and implications for the efficiency of feed utilisation. Proceedings of the Australian Society of Animal Production, 21 . pp. 92-94.

Lancashire, J. F., Terry, T. D., Blackall, P. J. and Jennings, M. P. (2005) Plasmid-encoded Tet B tetracycline resistance in Haemophilus parasuis. Antimicrobial agents and chemotherapy, 49 (5). pp. 1927-1931. ISSN 0066-48041098-6596

Lazarus, B., Paterson, D. L., Mollinger, J. L. and Rogers, B. A. (2015) Do Human Extraintestinal Escherichia coli Infections Resistant to Expanded-Spectrum Cephalosporins Originate From Food-Producing Animals? A Systematic Review. Clinical Infectious Diseases, 60 (3). p. 439. ISSN 1058-4838

Lewis, R. J., Nielsen, K. J., Craik, D. J., Loughnan, M. L., Adams, D. A., Sharpe, I. A., Luchian, T., Adams, D. J., Bond, T., Thomas, L., Jones, A., Matheson, J. L., Drinkwater, R., Andrews, P. R. and Alewood, P. F. (2000) Novel omega-conotoxins from Conus catus discriminate among neuronal calcium channel subtypes. Journal of biological chemistry, 275 (45). pp. 35335-44. ISSN 0021-9258 (Print)0021-9258

Loh, Z. H., Ouwerkerk, D., Klieve, A. V., Hungerford, N. L. and Fletcher, M. T. (2020) Toxin Degradation by Rumen Microorganisms: A Review. Toxins, 12 (10). ISSN 2072-6651

Ooi, M. C., Goulden, E. F., Smith, G. G. and Bridle, A. R. (2021) Predatory bacteria in the haemolymph of the cultured spiny lobster Panulirus ornatus. Microbiology, 167 (11). ISSN 1465-2080

Roy Chowdhury, P., Alhamami, T., Venter, H., Veltman, T., Carr, M., Mollinger, J. L., Trott, D. J. and Djordjevic, S. P. (2024) Identification and evolution of ICE-PmuST394: a novel integrative conjugative element in Pasteurella multocida ST394. Journal of Antimicrobial Chemotherapy . ISSN 0305-7453

Seshadri, R., Leahy, S. C., Attwood, G. T., Teh, K. H., Lambie, S. C., Cookson, A. L., Eloe-Fadrosh, E. A., Pavlopoulos, G. A., Hadjithomas, M., Varghese, N. J., Paez-Espino, D., Perry, R., Henderson, G., Creevey, C. J., Terrapon, N., Lapebie, P., Drula, E., Lombard, V., Rubin, E., Kyrpides, N. C., Henrissat, B., Woyke, T., Ivanova, N. N., Kelly, W. J., Palevic, N., Janssen, P. H., Ronimus, R. S., Noel, S., Soni, P., Reilly, K., Atherly, T., Ziemer, C., Wright, A., Ishaq, S., Cotta, S., Thompson, S., Crosley, K., McKain, S., Wallace, R. J., Flint, H. J., Martin, J. C., Forster, R. J., Gruninger, R. J., McAllister, T., Gilbert, R. A., Ouwerkerk, D., Klieve, A., Jassim, R. A., Denman, S., McSweeney, C., Rosewarne, S., Koike, S., Kobayashi, Y., Mitsumori, M., Shinkai, T., Cravero, S. and Cerón Cucchi, T. (2018) Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nature Biotechnology, 36 (4). pp. 359-367.

Speare, R. and Thomas, A.D. (1988) Orphaned kangaroo and wallaby joeys as a potential zoonotic source of Salmonella spp. The Medical Journal of Australia, 148 . pp. 619-623.

Stephens, C. P. and Hampson, D. J. (2002) Experimental infection of broiler breeder hens with the intestinal spirochaete Brachyspira ( Serpulina ) pilosicoli causes reduced egg production. Avian Pathology, 31 (2). pp. 169-175. ISSN 0307-9457

Sun, X., Blackall, P. J., Daniel, P., Chandra, K., Jenkin, S. and Turni, C. (2021) An improved multiplex PCR for Actinobacillus pleuropneumoniae, Glaesserella australis and Pasteurella multocida. Journal of Microbiological Methods, 191 . p. 106360. ISSN 0167-7012

Swain, R. A., Klieve, A. V. and Nolan, J. V. (1996) Factors affecting the rumen bacteriophage population. Proceedings of the Australian Society of Animal Production, 21 . p. 409.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1996) Natural variability and diurnal fluctuations within the bacteriophage population of the rumen. Applied and Environmental Microbiology, 62 (3). pp. 994-997.

Templeton, J. M., Botella, J.R. and Blackall, P. J. (2022) Are point of management assays relevant for food safety in the poultry industries? Microbiology Australia, 43 (2). pp. 67-70. ISSN 2201-9189

Torok, V. A., Hughes, R. J., Mikkelsen, L. L., Perez-Maldonado, R., Balding, K., MacAlpine, R., Percy, N. J. and Ophel-Keller, K. (2011) Identification and Characterization of Potential Performance-Related Gut Microbiotas in Broiler Chickens across Various Feeding Trials. Applied and Environmental Microbiology, 77 (17). pp. 5868-5878.

White, R. T., Ashcroft, M. M., Bauer, M. J., Bell, J., Butkiewicz, D., Alvarez-Fraga, L., Gibson, J. S., Kidsley, A. K., Mollinger, J. L., Peters, K. M., Phan, M.-D., Roberts, L. W., Rogers, B. A., Schembri, M. A., Trott, D. J., Turnidge, J., Forde, B. M. and Beatson, S. A. (2024) The complete genome sequence of five pre-2013 Escherichia coli sequence type (ST)1193 strains reveals insights into an emerging pathogen. Access Microbiology, 6 (10). ISSN 2516-8290

Yuan, Y., Gauthier, E., Ouwerkerk, D., Fletcher, M. T. and Laycock, B. (2022) Unravelling biodegradation and toxin release kinetics of poly(3-hydroxybutyrate-co-3-hydroxyvalerate)-based biocomposites in a simulated rumen environment: A preliminary study. Sustainable Materials and Technologies, 33 . e00498. ISSN 2214-9937

Zerna, G., Rathinasamy, V. A., Toet, H., Anderson, G. R., Dempster, R., Spithill, T. W. and Beddoe, T. (2021) Evaluation of Immunogenicity and Efficacy of Fasciola hepatica Tetraspanin 2 (TSP2) Fused to E. coli Heat-Labile Enterotoxin B Subunit LTB Adjuvant Following Intranasal Vaccination of Cattle. Vaccines, 9 (11). p. 1213. ISSN 2076-393X

Zhou, Y., Roseli, R. B., Hungerford, N. L., Fletcher, M. T., Ouwerkerk, D., Gilbert, R. A. and Krenske, E. H. (2024) Binding of the plant-derived toxin simplexin to bovine protein kinase C: insights from molecular dynamics. Organic & Biomolecular Chemistry, 22 (14). pp. 2863-2876. ISSN 1477-0520

Book Section

Gilbert, R. A. and Ouwerkerk, D. (2020) Ruminal viruses and extrachromosomal genetic elements. In: Rumen Microbiology: From Evolution to Revolution. Burleigh Dodds Series in Agricultural Science (83). Burleigh Dodds. ISBN 9781786763327

Klieve, A. V. and Gilbert, R. A. (2005) Bacteriophage populations. In: Methods in Gut Microbial Ecology for Ruminants. Springer.

Klieve, A. V. (2005) Bacteriophages. In: Methods in Gut Microbial Ecology for Ruminants. Springer, 226 pages. ISBN 978-1-4020-3790-0

Premaratne, A., Zhang, H., Wang, R., Chinivasagam, H.N. and Billington, C. (2021) Phage Biotechnology to Mitigate Antimicrobial Resistance in Agriculture. In: Sustainable Agriculture Reviews 49: Mitigation of Antimicrobial Resistance Vol 2. Natural and Synthetic Approaches. Springer International Publishing, Cham. ISBN 978-3-030-58259-3

Monograph

Chinivasagam, H.N., Estella, W., Cockerill, S. A., Maddock, L., Mayer, D. G., Billington, C., Premaratne, A., Liang, L., Connerton, P. L. and Connerton, I. F. (2020) Moving from concept to control; use of phages for Campylobacter reduction. Project Report. AgriFutures.

Ouwerkerk, D., Gilbert, R. A. and Klieve, A. (2011) Archaeaphage therapy to control rumen methanogens. Project Report. Meat & Livestock Australia Limited.

Conference or Workshop Item

Bettelheim, K. A., Kuzevski, A., Gilbert, R. A., Krause, D.O. and McSweeney, C. S. (2003) The diversity of Escherichia coli serotypes and biotypes in cattle faeces and the effects of diet-induced changes. In: Microbiology: Art in Science, Joint Meeting of the Australian and New Zealand Societies for Microbiology, 28 September - 2 October 2003, Auckland, New Zealand.

Gilbert, R. A., Klieve, A. V. and Nolan, J. V. (2000) Survival of phage particles in the rumen ecosystem. In: Australian Society for Microbiology Annual Scientific Meeting, 8-13 July 2000, Cairns, Queensland.

Klieve, A. V., Swain, R. A. and Nolan, J. V. (1993) Natural variability and diurnal fluctuation of bacteriophage populations in the rumen. In: 22nd Biennial Conference on Rumen Function, November 9-11, 1993, Chicago, USA.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1996) Effect of tannic acid on the bacteriophage populations within sheep rumen. In: Microbiology Australia, International meeting and exhibition of the Australian and New Zealand societies for microbiology, Christchurch, New Zealand.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1995) Tannic acid reduces bacteriophage numbers in rumen bacterial cultures. In: Bryant 70th Symposium, Illinois, USA.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1995) Tannic acid reduces bacteriophage numbers in rumen bacterial cultures. In: Australian Society for Microbiology Annual Scientific Meeting, 24-29 September 1995, Canberra, ACT, Australia..

Other

Gilbert, R. A. (2023) Pyramidobacter sp. strain YE332 genome sequencing. State of Queensland.