Items where Author is "Ouwerkerk, Diane"

Article

Zhou, Y., Roseli, R. B., Hungerford, N. L., Fletcher, M. T., Ouwerkerk, D., Gilbert, R. A. and Krenske, E. H. (2024) Binding of the plant-derived toxin simplexin to bovine protein kinase C: insights from molecular dynamics. Organic & Biomolecular Chemistry, 22 (14). pp. 2863-2876. ISSN 1477-0520

Gilbert, R. A., Davis, C., Gravel, J. L. and Ouwerkerk, D. (2024) Genome sequence and annotation of Pyramidobacter sp. strain YE332, isolated from a cattle rumen fermentation of Leucaena leaf. Microbiology Resource Announcements . e01012-23.

Bajagai, Y. S., Yeoh, Y. K., Li, X., Zhang, D., Dennis, P. G., Ouwerkerk, D., Dart, P. J., Klieve, A. V. and Bryden, W. L. (2023) Enhanced meat chicken productivity in response to the probiotic Bacillus amyloliquefaciens H57 is associated with the enrichment of microbial amino acid and vitamin biosynthesis pathways. Journal of Applied Microbiology, 134 (5). ISSN 1364-5072

Loh, Z. H., Hungerford, N. L., Ouwerkerk, D., Klieve, A. V. and Fletcher, M. T. (2023) Identification of Acid Hydrolysis Metabolites of the Pimelea Toxin Simplexin for Targeted UPLC-MS/MS Analysis. Toxins, 15 (9). p. 551. ISSN 2072-6651

Yuan, Y., Gauthier, E., Ouwerkerk, D., Fletcher, M. T. and Laycock, B. (2022) Unravelling biodegradation and toxin release kinetics of poly(3-hydroxybutyrate-co-3-hydroxyvalerate)-based biocomposites in a simulated rumen environment: A preliminary study. Sustainable Materials and Technologies, 33 . e00498. ISSN 2214-9937

Gilbert, R. A., Netzel, G., Chandra, K., Ouwerkerk, D. and Fletcher, M. T. (2021) Degradation of the Indospicine Toxin from Indigofera spicata by a Mixed Population of Rumen Bacteria. Toxins, 13 (6). ISSN 2072-6651

Yuan, Y., Hungerford, N. L., Gauthier, E., Ouwerkerk, D., Yong, K. W. L., Fletcher, M. T. and Laycock, B. (2021) Extraction and determination of the Pimelea toxin simplexin in complex plant-polymer biocomposites using ultrahigh-performance liquid chromatography coupled with quadrupole Orbitrap mass spectrometry. Analytical and Bioanalytical Chemistry, 413 . pp. 5121-5133. ISSN 1618-2650

Grant, L. J., Mikkelsen, D., Phan, A. D. T., Kang, S., Ouwerkerk, D., Klieve, A. V., Gidley, M. J. and Williams, B. A. (2020) Purified plant cell walls with adsorbed polyphenols alter porcine faecal bacterial communities during in vitro fermentation. Food & Function, 11 (1). pp. 834-845. ISSN 2042-6496

Gilbert, R. A., Townsend, E. M., Crew, K. S., Hitch, T. C. A., Friedersdorff, J. C. A., Creevey, C. J., Pope, P. B., Ouwerkerk, D. and Jameson, E. (2020) Rumen Virus Populations: Technological Advances Enhancing Current Understanding. Frontiers in Microbiology, 11 (450). ISSN 1664-302X

Loh, Z. H., Ouwerkerk, D., Klieve, A. V., Hungerford, N. L. and Fletcher, M. T. (2020) Toxin Degradation by Rumen Microorganisms: A Review. Toxins, 12 (10). ISSN 2072-6651

Gordon, R. J., Hungerford, N. L., Laycock, B., Ouwerkerk, D. and Fletcher, M. T. (2019) Adsorbents for the Sequestration of the Pimelea Toxin, Simplexin. Proceedings, 36 (1). p. 90. ISSN 2504-3900

Gauthier, E., Ouwerkerk, D., Laycock, B. and Fletcher, M. (2019) Biopolymer Composites for Slow Release to Manage Pimelea Poisoning in Cattle. Proceedings, 36 (1). p. 97. ISSN 2504-3900

Ouwerkerk, D., Maguire, A. J., Gravel, J. L., Minchin, C. M., Gravel, M., Klieve, A. and Gilbert, R. A. (2019) Effect of Feeding Different Cultivars of Leucaena leucocephala on Rumen-Based in vitro Anaerobic Fermentations. Proceedings, 36 (1). p. 96. ISSN 2504-3900

Yuan, Y., Gauthier, E., Hungerford, N. L., Ouwerkerk, D., Fletcher, M. T. and Laycock, B. (2019) Modelling the Controlled Release of Toxins in a Rumen Environment. Proceedings, 36 (1). p. 89. ISSN 2504-3900

Gilbert, R. A. and Ouwerkerk, D. (2019) The genetics of rumen phage populations. Proceedings . ISSN 2504-3900

Grant, L. J., Mikkelsen, D., Ouwerkerk, D., Klieve, A. V., Gidley, M. J. and Williams, B. A. (2019) Whole fruit pulp (mango) and a soluble fibre (pectin) impact bacterial diversity and abundance differently within the porcine large intestine. Bioactive Carbohydrates and Dietary Fibre, 19 . p. 100192. ISSN 2212-6198

Schofield, B. J., Lachner, N., Le, O. T., McNeill, D. M., Dart, P., Ouwerkerk, D., Hugenholtz, P. and Klieve, A. V. (2018) Beneficial changes in rumen bacterial community profile in sheep and dairy calves as a result of feeding the probiotic Bacillus amyloliquefaciens H57. Journal of Applied Microbiology, 124 (3). pp. 855-866. ISSN 1365-2672

Seshadri, R., Leahy, S. C., Attwood, G. T., Teh, K. H., Lambie, S. C., Cookson, A. L., Eloe-Fadrosh, E. A., Pavlopoulos, G. A., Hadjithomas, M., Varghese, N. J., Paez-Espino, D., Perry, R., Henderson, G., Creevey, C. J., Terrapon, N., Lapebie, P., Drula, E., Lombard, V., Rubin, E., Kyrpides, N. C., Henrissat, B., Woyke, T., Ivanova, N. N., Kelly, W. J., Palevic, N., Janssen, P. H., Ronimus, R. S., Noel, S., Soni, P., Reilly, K., Atherly, T., Ziemer, C., Wright, A., Ishaq, S., Cotta, S., Thompson, S., Crosley, K., McKain, S., Wallace, R. J., Flint, H. J., Martin, J. C., Forster, R. J., Gruninger, R. J., McAllister, T., Gilbert, R. A., Ouwerkerk, D., Klieve, A., Jassim, R. A., Denman, S., McSweeney, C., Rosewarne, S., Koike, S., Kobayashi, Y., Mitsumori, M., Shinkai, T., Cravero, S. and Cerón Cucchi, T. (2018) Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nature Biotechnology, 36 (4). pp. 359-367.

Finn, D., Catton, K., Heenan, M., Kopittke, P., Ouwerkerk, D., Klieve, A. and Dalal, R. (2018) Differential Gene Expression in the Model Actinomycete Streptomyces coelicolor A3(2) Supports Nitrogen Mining Dependent on the Plant Carbon to Nitrogen Ratio. Agriculture, 8 (12). p. 192.

Mukhopadhya, I., Morais, S., Laverde-Gomez, J., Sheridan, P. O., Walker, A. W., Kelly, W., Klieve, A. V., Ouwerkerk, D., Duncan, S. H., Louis, P., Koropatkin, N., Cockburn, D., Kibler, R., Cooper, P. J., Sandoval, C., Crost, E., Juge, N., Bayer, E. A. and Flint, H. J. (2018) Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii. Environmental microbiology, 20 (1). pp. 324-336. ISSN 1462-2912

Gilbert, R. A., Kelly, W. J., Altermann, E., Leahy, S. C., Minchin, C., Ouwerkerk, D. and Klieve, A. V. (2017) Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria. Frontiers in Microbiology, 8 (2340). ISSN 1664-302X

O'Hara, P. J., Klieve, A. V., Murray, P. J., Maguire, A. J., Ouwerkerk, D. and Harper, K. (2016) Effect of time and diet change on the bacterial community structure throughout the gastrointestinal tract and in faeces of the northern brown bandicoot, Isoodon macrourus. Australian Journal of Zoology, 64 (1). p. 48. ISSN 0004-959X

Schofield, B. J., Skarshewski, A., Lachner, N., Ouwerkerk, D., Klieve, A. V., Dart, P. and Hugenholtz, P. (2016) Near complete genome sequence of the animal feed probiotic, Bacillus amyloliquefaciens H57. Standards in Genomic Sciences, 11 (1). pp. 1-7. ISSN 1944-3277

Le, O. T., Schofield, B., Dart, P. J., Callaghan, M. J., Lisle, A. T., Ouwerkerk, D., Klieve, A. V. and McNeill, D. M. (2016) Production responses of reproducing ewes to a by-product-based diet inoculated with the probiotic Bacillus amyloliquefaciens strain H57. Animal Production Science, 57 (6). pp. 1097-1105. ISSN 1836-0939

De Barbieri, I., Gulino, L., Hegarty, R.S., Oddy, V.H., Maguire, A., Li, L., Klieve, A.V. and Ouwerkerk, D. (2015) Production attributes of Merino sheep genetically divergent for wool growth are reflected in differing rumen microbiotas. Livestock Science, 178 . pp. 119-129. ISSN 18711413

De Barbieri, I., Hegarty, R.S., Silveira, C., Gulino, L.M., Oddy, V.H., Gilbert, R. A., Klieve, A.V. and Ouwerkerk, D. (2015) Programming rumen bacterial communities in newborn Merino lambs. Small Ruminant Research, 129 . pp. 48-59. ISSN 09214488

Henderson, G., Cox, F., Ganesh, S., Jonker, A., Young, W., Janssen, P.H. and Ouwerkerk, D. (2015) Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range. Scientific Reports, 5 . p. 14567.

Godwin, S., Kang, A., Gulino, L. M., Manefield, M., Gutierrez-Zamora, M. L., Kienzle, M., Ouwerkerk, D., Dawson, K. and Klieve, A. V. (2014) Investigation of the microbial metabolism of carbon dioxide and hydrogen in the kangaroo foregut by stable isotope probing. ISME Journal . ISSN 17517362 (ISSN)

Gulino, L. M., Ouwerkerk, D., Kang, A. Y. H., Maguire, A. J., Kienzle, M. and Klieve, A. V. (2013) Shedding Light on the Microbial Community of the Macropod Foregut Using 454-Amplicon Pyrosequencing. Plos One, 8 (4). ISSN 1932-6203

Merson, S. D., Ouwerkerk, D., Gulino, L.-M., Klieve, A. V., Bonde, R. K., Burgess, E. A. and Lanyon, J. M. (2013) Variation in the hindgut microbial communities of the Florida manatee, Trichechus manatus latirostris over winter in Crystal River, Florida. FEMS Microbiology Ecology, 87 (3). pp. 601-615. ISSN 1574-6941

Klieve, A. V., Ouwerkerk, D. and Maguire, A. J. (2012) Archaea in the foregut of macropod marsupials: PCR and amplicon sequence-based observations. Journal of Applied Microbiology, 113 (5). pp. 1065-1075. ISSN 1364-5072

Eigeland, K. A., Lanyon, J. M., Trott, D. J., Ouwerkerk, D., Blanshard, W., Milinovich, G. J., Gulino, L. M., Martinez, E., Merson, S. and Klieve, A. V. (2012) Bacterial Community Structure in the Hindgut of Wild and Captive Dugongs (Dugong dugon). Aquatic Mammals, 38 (4). pp. 402-411. ISSN 0167-5427

Aldai, N., Klieve, A. V., Dugan, M. E. R., Kramer, J. K. G., Ouwerkerk, D., Aalhus, J. L., McKinnon, J. J. and McAllister, T. A. (2012) Evaluation of rumen fatty acid hydrogenation intermediates and differences in bacterial communities after feeding wheat- or corn-based dried distillers grains to feedlot cattle. Journal of Animal Science, 90 (8). pp. 2699-2709. ISSN 0021-8812

Klieve, A. V., McLennan, S. R. and Ouwerkerk, D. (2012) Persistence of orally administered Megasphaera elsdenii and Ruminococcus bromii in the rumen of beef cattle fed a high grain (barley) diet. Animal Production Science, 52 (5). pp. 297-304. ISSN 1836-0939

Gilbert, R. A., Ouwerkerk, D., Zhang, L.H. and Klieve, A.V. (2010) In vitro detection and primary cultivation of bacteria producing materials inhibitory to ruminal methanogens. Journal of Microbiological Methods, 80 (2). pp. 217-218.

Joachimsthal, E.L., Reeves, R.K.H., Hung, J., Nielsen, L. K., Ouwerkerk, D., Klieve, A. V. and Vickers, C.E. (2010) Production of bacteriocins by Streptococcus bovis strains from Australian ruminants. Journal of Applied Microbiology, 108 (2). pp. 428-436. ISSN 13645072 (ISSN)

Ouwerkerk, D., Maguire, A. J., McMillen, L. and Klieve, A.V. (2009) Hydrogen utilising bacteria from the forestomach of eastern grey (Macropus giganteus) and red (Macropus rufus) kangaroos. Animal Production Science, 49 (11). pp. 1043-1051.

Joachimstal, E.L., Reeves, R.K.H., Hung, J., Nielsen, L.K., Ouwerkerk, D., Klieve, A.V. and Vickers, C.E. (2009) Production of bacteriocins by Streptococcus bovis strains from Australian ruminants. Journal of Applied Microbiology, 108 (2). pp. 428-436.

Milinovich, G.J., Burrell, P.C., Pollitt, C.C., Klieve, A.V., Blackall, L.L., Ouwerkerk, D., Woodland, E. and Trott, D.J. (2008) Microbial ecology of the equine hindgut during oligofructose-induced laminitis. ISME Journal, 2 (11). pp. 1089-1100.

Ouwerkerk, D., Turner, A.F. and Klieve, A.V. (2008) Diversity of methanogens in ruminants in Queensland. Australian Journal of Experimental Agriculture, 48 (7). pp. 722-725.

Klieve, A.V., O'Leary, M.N., McMillen, L. and Ouwerkerk, D. (2007) Ruminococcus bromii, identification and isolation as a dominant community member in the rumen of cattle fed a barley diet. Journal of Applied Microbiology, 103 (6). pp. 2065-2073.

Ouwerkerk, D., Klieve, A. V., Forster, R.J., Templeton, J. M. and Maguire, A. J. (2005) Characterization of culturable anaerobic bacteria from the forestomach of an eastern grey kangaroo, Macropus giganteus. Letters in Applied Microbiology, 41 (4). pp. 327-333. ISSN 1472-765X

Klieve, A. V., Yokoyama, M. T., Forster, R. J., Ouwerkerk, D., Bain, P. A. and Mawhinney, E. L. (2005) Naturally occurring DNA transfer system associated with membrane vesicles in cellulolytic Ruminococcus spp. of ruminal origin. Applied and environmental microbiology, 71 (8). pp. 4248-4253. ISSN 0099-22401098-5336

Klieve, A.V., Bain, P.A., Yokoyama, M.T., Ouwerkerk, D., Foster, R.J. and Turner, A.F. (2004) Bacteriophages that infect the cellulolytic ruminal bacterium Ruminococcus albus AR67. Letters in Applied Microbiology, 38 (4). pp. 333-338.

Tolosa, M.X., Dinh, T.V., McLennan, S. R., Ouwerkerk, D., Poppi, D. P. and Klieve, A. V. (2004) Effect of molasses diets on population profiles of rumen bacteria. Animal Production in Australia, 1 (1). p. 328. ISSN 0728-5965

Tolosa, M.X., Van, T.D., Klieve, A. V., Ouwerkerk, D., Poppi, D. P. and McLennan, S. R. (2004) Molecular characterisation of rumen bacterial populations in cattle fed molasses diets. Animal Production in Australia. Proceedings of the Australian Society of Animal Production, 25 . p. 328. ISSN 0728-5965

Mackie, R.I., Aminov, R.I., Hu, W., Klieve, A.V., Ouwerkerk, D., Sundset, M.A. and Kamagata, Y. (2003) Ecology of uncultivated oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches. Applied and Environmental Microbiology, 69 (11). pp. 6808-6815.

Klieve, A.V., Hennessy, D., Ouwerkerk, D., Forster, R.J., Mackie, R.I. and Attwood, G.T. (2003) Establishing populations of Megasphaera elsdenii YE 34 and Butyrivibrio fibrisolvens YE 44 in the rumen of cattle fed high grain diets. Journal of Applied Microbiology, 95 (3). pp. 621-630.

Ouwerkerk, D., Klieve, A. V. and Forster, R.J. (2002) Enumeration of Megasphaera elsdenii in rumen contents by real-time Taq nuclease assay. Journal of Applied Microbiology, 92 (4). pp. 753-758. ISSN 1364-5072

Klieve, A. V., Ouwerkerk, D., Turner, A. and Roberton, R. (2002) The production and storage of a fermentor-grown bacterial culture containing Synergistes jonesii, for protecting cattle against mimosine and 3-hydroxy-4(1H)-pyridone toxicity from feeding on Leucaena leucocephala. Australian Journal of Agricultural Research, 53 (1). pp. 1-5.

Ouwerkerk, D. and Klieve, A. V. (2001) Bacterial diversity within feedlot manure. Anaerobe, 7 (2). pp. 59-66. ISSN 1075-9964

Attwood, G. T., Klieve, A. V., Ouwerkerk, D. and Patel, B. K. (1998) Ammonia-hyperproducing bacteria from New Zealand ruminants. Applied and environmental microbiology, 64 (5). pp. 1796-1804. ISSN 0099-22401098-5336

Attwood, G. T., Klieve, A. V., Ouwerkerk, D. and Patel, B. K.C. (1998) Ammonia-hyperproducing bacteria from New Zealand ruminants. Applied and Environmental Microbiology, 64 (5). pp. 1796-1804. ISSN 0099-2240

Book Section

Gilbert, R. A. and Ouwerkerk, D. (2020) Ruminal viruses and extrachromosomal genetic elements. In: Ruminal viruses and extrachromosomal genetic elements. Burleigh Dodds Series in Agricultural Science (83). Burleigh Dodds. ISBN 9781786763327

Gilbert, R. A., Ouwerkerk, D. and Klieve, A. V. (2015) Phage therapy in livestock methane amelioration. In: Livestock production and climate change. Cabi. ISBN 9781780644325

Forster, R.J., Klieve, A. V. and Ouwerkerk, D. (2001) Advances in evaluating and altering the rumen microbial ecosystem. In: Recent advances in animal nutrition in Australia 2001, 16th Symposium, Armidale, Australia. Animal Science, University of New England, Australia. ISBN 1-8638-9743-7

Monograph

Klieve, A., Harper, K., Martinez, E. and Ouwerkerk, D. (2012) Increasing productivity and reducing methane emissions by supplementing feed with dietary lipids. Project Report. Meat & Livestock Australia Limited.

Finn, D., Ouwerkerk, D. and Klieve, A. (2012) Methanotrophs from natural ecosystems as biocontrol agents for ruminant methane emissions. Project Report. Meat & Livestock Australia Limited.

Ouwerkerk, D., Gilbert, R. A. and Klieve, A. (2011) Archaeaphage therapy to control rumen methanogens. Project Report. Meat & Livestock Australia Limited.

Conference or Workshop Item

Gravel, J. L., Gilbert, R. A., Maguire, A. J., Minchin, C. M. and Ouwerkerk, D. (2022) Development of a mixed microbial drench for detoxification of three Leucaena cultivars. In: Australian Association of Animal Sciences 34th Biennial Conference 2022, 5–7 July 2022, Cairns, Queensland.

Gravel, J. L., Gilbert, R. A., Maguire, A. J., Minchin, C. M. and Ouwerkerk, D. (2022) Do Queensland cattle possess rumen bacteria capable of degrading Leucaena toxins? In: Australian Association of Animal Sciences 34th Biennial Conference 2022, 5–7 July 2022, Cairns, Queensland.

Loh, Z. H., Hungerford, N. L., Ouwerkerk, D., Klieve, A. V. and Fletcher, M. T. (2022) Effects of adsorbents and probiotics in mitigating simplexin poisoning effects in cattle fed Pimelea. In: Australian Association of Animal Sciences 34th Biennial Conference 2022, 5–7 July 2022, Cairns, Queensland.

Ouwerkerk, D., Gauthier, E., Yuan, Y., Costa, D. F. A., Laycock, B. and Fletcher, M. T. (2022) In vivo rumen microbial degradation of polyhydroxyalkanoate biopolymers. In: Australian Association of Animal Sciences 34th Biennial Conference 2022, 5–7 July 2022, Cairns, Queensland.

Ouwerkerk, D., Gravel, J. L., Maguire, A. J., Minchin, C. M., Klieve, A.V. and Gilbert, R. A. (2021) Changes in mixed microbial inoculums to prevent the toxic side-effects in cattle grazing new varieties of Leucaena. In: 33rd Australian Association of Animal Sciences Conference, 1-3 February 2021, Fremantle, Western Australia.

Ouwerkerk, D., Gilbert, R. A., Gravel, J. L., Maguire, A. J., Minchin, C. M., Hungerford, N. L., Loh, Z. H. and Fletcher, M. T. (2021) Enriching for rumen bacteria to degrade the Pimelea plant toxin simplexin, in an anaerobic in vitro fermenter. In: 33rd Australian Association of Animal Sciences Conference, 1-3 February 2021, Fremantle, Western Australia.

Loh, Z.H., Hungerford, N.L., Ouwerkerk, D., Klieve, A.V. and Fletcher, M.T. (2019) Mitigating the Effects of the Toxin Simplexin in Pimelea Poisoning of Cattle by Development of a Microbial Probiotic. In: 4th Queensland Annual Chemistry Symposium QACS 2019, 29th November 2019, University of Queensland, Brisbane.

Yuan, Y., Gauthier, E., Hungerford, N.L., Ouwerkerk, D., Fletcher, M.T. and Laycock, B. (2019) Modelling the controlled release of toxins in a rumen environment. In: 4th Queensland Annual Chemistry Symposium QACS 2019, 29th November 2019, University of Queensland, Brisbane.

Gilbert, R. A., Ouwerkerk, D., Negara, W., Schatz, T., Klieve, A. and McCosker, K. D. (2019) Shifting cattle from grazing extensive pastures to floodplain pastures in the Northern Territory: Effect on rumen microbial communities. In: Proceedings of the Northern Beef Research Update Conference, 19-22 August 2019, Brisbane, Queensland, Australia.

Le, O.T., Mcneill, D.M., Klieve, A. V., Dart, P.J., Ouwerkerk, D., Schofield, B. and Callaghan, M.J. (2014) Probiotic Bacillus amyloliquefaciens Strain H57 Improves the Performance of Pregnant and Lactating Ewes Fed a Diet Based on Palm Kernel Meal. In: Joint ISNH/ISRP International Conference 2014: Harnessing the Ecology and Physiology of Herbivores, 8-12 September 2014, National Convention Centre, Canberra, Australia.

Tolosa Alvarez, M., Dinh, V., Klieve, A. V., Ouwerkerk, D., Poppi, D. P. and McLennan, S. R. (2005) Molecular profiling of dominant rumen bacteria in cattle fed molasses. In: Showcasing Faculty research through our postgraduates, 8th December 2005, Gatton, QLD.